Workflow Provenance Data

Workflow overall summary

Taverna Workflow Instance ID	FlowID:Taverna:Workflow:org.embl.ebi.escience.scufl.ScuflModel@12dd370:user:rs2@mygrid.org.uk::1055514549221
Status	COMPLETE
User	user:MIR3TestSet1

Invoked Services Details

SERVICE

http://mygrid.ncl.ac.uk/axis/services/SrsEbiQuery?wsdl

Port

SrsEbiQuery

Operation

queryByArrayIds

Status

COMPLETE

Start Time

End Time

Name	Type	Value
INPUT DATA SET
usas	org.w3c.dom.Element	<queryHgvbaseByEmblAccNumberReturn soapenc:arrayType="xsd:string[2]" xmlns:soapenc="http://schemas.xmlsoap.org/soap/encoding/" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="soapenc:Array"> <item>HGBASE:SNP000005065</item> <item>HGBASE:SNP000005066</item> </queryHgvbaseByEmblAccNumberReturn>
OUTPUT DATA SET
Name	Type	Value
queryByArrayIdsReturn	org.w3c.dom.Element	<queryByArrayIdsReturn soapenc:arrayType="xsd:string[2]" xmlns:soapenc="http://schemas.xmlsoap.org/soap/encoding/" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="soapenc:Array"> <item>ID SNP000005065 VarType SNP VarStatus Suspected CurationStatus MRA DNARefMolecule EMBL::Y18949:256 UpStreamSeq ATCCAACTCCGGCTTCCACCCAGCG Allele G Allele C DnStreamSeq TGCGGCACCTGGCCAGAAGACGCGG XX GeneID GID000000712 GeneSymbol BCL2L2 GeneName BCL2-like 2 GeneType Functional Gene GeneRegion Int:Splc? Feature DNA Feature /seq:g Feature DNA Feature /seq:c XX DbXRef EMBL::Y18949 DbXRef PubMed::10570959 DbXRef dbSNP_rsID::rs1800611 DbXRef dbSNP_ssID::ss2420721 XX AssayMethod RFLP Assay [AfeI, Eco47III, Aor51HI], [AspLEI, BstHHI, HspAI, HinP1I, Assay Hin6I, HhaI, CfoI], [Bsc4I, BsiYI, BslI, BseLI], [Bsp143II, Assay BstH2I, HaeII], MspA1I, TseI XX SourceID SRC000000412 Citation Emahazion T, et al, Gene 238:315-324, 1999 Submitter Anthony J Brookes (SUB000000001) MeSH Evolution, Molecular MeSH Human MeSH Neurodegenerative Diseases/genetics* MeSH Polymerase Chain Reaction MeSH Polymorphism, Single Nucleotide* MeSH Support, Non-U.S. Govt SourceID SRC000000001 Citation dbSNP_rsID Record // </item> <item>ID SNP000005066 VarType SNP VarStatus Suspected CurationStatus MRA DNARefMolecule EMBL::Y18949.1:283 UpStreamSeq CCGGCCTCAGCAGCGAGAAAGAGCC Allele C Allele T DnStreamSeq CTCTTCGCCCCCAAGGCAGGAAGTC XX GeneID GID000000712 GeneSymbol BCL2L2 GeneName BCL2-like 2 GeneType Functional Gene GeneRegion 5Flank Feature DNA Feature /seq:c Feature DNA Feature /seq:t XX DbXRef EMBL::Y18949.1 DbXRef PubMed::10570959 DbXRef dbSNP_rsID::rs1800612 DbXRef dbSNP_ssID::ss2420722 XX AssayMethod RFLP Assay [BanII, EcoT38I, Eco24I, FriOI], [BmyI, MhlI, Bsp1286I, SduI] XX SourceID SRC000000412 Citation Emahazion T, et al, Gene 238:315-324, 1999 Submitter Anthony J Brookes (SUB000000001) MeSH Evolution, Molecular MeSH Human MeSH Neurodegenerative Diseases/genetics* MeSH Polymerase Chain Reaction MeSH Polymorphism, Single Nucleotide* MeSH Support, Non-U.S. Govt SourceID SRC000000001 Citation dbSNP_rsID Record // </item> </queryByArrayIdsReturn>

SERVICE

http://mygrid.ncl.ac.uk/axis/services/affymapper?wsdl

Port

AffymetrixMapper

Operation

getAccessionNumber

Status

COMPLETE

Start Time

End Time

Name	Type	Value
INPUT DATA SET
probeSetId	string	<probeSetId xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">31957_r_at</probeSetId>
OUTPUT DATA SET
Name	Type	Value
getAccessionNumberReturn	org.w3c.dom.Element	<getAccessionNumberReturn xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="xsd:string">embl-AccNumber:Y18949</getAccessionNumberReturn>
getAccessionNumberReturn	org.w3c.dom.Element	<getAccessionNumberReturn xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="xsd:string">embl-AccNumber:Y18949</getAccessionNumberReturn>

SERVICE

http://mygrid.ncl.ac.uk/axis/services/SrsEbiQuery?wsdl

Port

SrsEbiQuery

Operation

queryHgvbaseByEmblAccNumber

Status

COMPLETE

Start Time

End Time

Name	Type	Value
INPUT DATA SET
emblAccNumber	org.w3c.dom.Element	<getAccessionNumberReturn xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="xsd:string">embl-AccNumber:Y18949</getAccessionNumberReturn>
OUTPUT DATA SET
Name	Type	Value
queryHgvbaseByEmblAccNumberReturn	org.w3c.dom.Element	<queryHgvbaseByEmblAccNumberReturn soapenc:arrayType="xsd:string[2]" xmlns:soapenc="http://schemas.xmlsoap.org/soap/encoding/" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="soapenc:Array"> <item>HGBASE:SNP000005065</item> <item>HGBASE:SNP000005066</item> </queryHgvbaseByEmblAccNumberReturn>

SERVICE

http://mygrid.ncl.ac.uk/axis/services/EmblSnpEdit?wsdl

Port

SnpFeatureEmblEditor

Operation

mergeSnpData

Status

COMPLETE

Start Time

End Time

Name	Type	Value
INPUT DATA SET
emblEntry	org.w3c.dom.Element	<queryByIdReturn xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="xsd:string">ID HSAY18949 standard; DNA; HUM; 624 BP. XX AC Y18949; XX SV Y18949.1 XX DT 08-OCT-1999 (Rel. 61, Created) DT 08-OCT-1999 (Rel. 61, Last updated, Version 1) XX DE Homo sapiens partial BCL2L2 gene, intronic sequence XX KW BCL2L2 gene. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Primates; Catarrhini; Hominidae; Homo. XX RN [2] RP 1-624 RA Emahazion T.; RT ; RL Submitted (15-APR-1999) to the EMBL/GenBank/DDBJ databases. RL T. Emahazion, Biomedical Center, Box 589, S-751 23 Uppsala, SWEDEN XX RN [3] RA Emahazion T., Jobs M., Howell W.M., Siegfried M., Wyoni P.I., Prince J.A., RA Brookes J.A.; RT "Identification of 167 polymorphisms in 88 genes from candidate RT neurodegeneration pathways"; RL Gene 238:315-324(1999). XX FH Key Location/Qualifiers FH FT source 1..624 FT /chromosome="14" FT /db_xref="taxon:9606" FT /organism="Homo sapiens" FT /tissue_type="blood" FT /map="14q11.2-q12" FT intron <1..>624 FT /note="apoptosis regulator bcl-w" FT /gene="BCL2L2" FT variation 212 FT /replace="c" FT /gene="BCL2L2" FT variation 283 FT /replace="c" FT /gene="BCL2L2" XX SQ Sequence 624 BP; 152 A; 191 C; 162 G; 118 T; 1 other; aaactacctg aagtcccctc aaggagggtg acagaaaggc ccaagtgccg ctggatgcca 60 aaccctcgtg tgtgagagct agcgccttgc cttaccactc cttgggatcc accttacagt 120 gaaacctagg cctggggaaa gcaggaggcg aatcgtcagg gcagcaaagg ctagaccagg 180 gtctgaatcc aactccggct tccacccagc gntgcggcac ctggccagaa gacgcggctc 240 ccacaagaga gaagggcccg gcctcagcag cgagaaagag cctctcttcg cccccaaggc 300 aggaagtcac cacagtcttg cacaaggcct ctagcatctg tctcacggag tctggcggtg 360 catctcctac tttcccacag cgcctgtcag cacgccatct atttactgag tgaaagatgc 420 taggccaaaa tcagagaaat gagagaacat ggtccatgtc ttccaatgct aggtccagcc 480 ccagtggtca aaggcgcagc cctggccctg catctcctca ttggacgaac atgctcacgc 540 cttcgtaagc acctgtgctc cggtgacctg gcccagatga ttaattccag gttcctgcgg 600 ctttacctgt ctgacaagat aaga 624 // </queryByIdReturn>
hgvbaseEntries	org.w3c.dom.Element	<queryByArrayIdsReturn soapenc:arrayType="xsd:string[2]" xmlns:soapenc="http://schemas.xmlsoap.org/soap/encoding/" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="soapenc:Array"> <item>ID SNP000005065 VarType SNP VarStatus Suspected CurationStatus MRA DNARefMolecule EMBL::Y18949:256 UpStreamSeq ATCCAACTCCGGCTTCCACCCAGCG Allele G Allele C DnStreamSeq TGCGGCACCTGGCCAGAAGACGCGG XX GeneID GID000000712 GeneSymbol BCL2L2 GeneName BCL2-like 2 GeneType Functional Gene GeneRegion Int:Splc? Feature DNA Feature /seq:g Feature DNA Feature /seq:c XX DbXRef EMBL::Y18949 DbXRef PubMed::10570959 DbXRef dbSNP_rsID::rs1800611 DbXRef dbSNP_ssID::ss2420721 XX AssayMethod RFLP Assay [AfeI, Eco47III, Aor51HI], [AspLEI, BstHHI, HspAI, HinP1I, Assay Hin6I, HhaI, CfoI], [Bsc4I, BsiYI, BslI, BseLI], [Bsp143II, Assay BstH2I, HaeII], MspA1I, TseI XX SourceID SRC000000412 Citation Emahazion T, et al, Gene 238:315-324, 1999 Submitter Anthony J Brookes (SUB000000001) MeSH Evolution, Molecular MeSH Human MeSH Neurodegenerative Diseases/genetics* MeSH Polymerase Chain Reaction MeSH Polymorphism, Single Nucleotide* MeSH Support, Non-U.S. Govt SourceID SRC000000001 Citation dbSNP_rsID Record // </item> <item>ID SNP000005066 VarType SNP VarStatus Suspected CurationStatus MRA DNARefMolecule EMBL::Y18949.1:283 UpStreamSeq CCGGCCTCAGCAGCGAGAAAGAGCC Allele C Allele T DnStreamSeq CTCTTCGCCCCCAAGGCAGGAAGTC XX GeneID GID000000712 GeneSymbol BCL2L2 GeneName BCL2-like 2 GeneType Functional Gene GeneRegion 5Flank Feature DNA Feature /seq:c Feature DNA Feature /seq:t XX DbXRef EMBL::Y18949.1 DbXRef PubMed::10570959 DbXRef dbSNP_rsID::rs1800612 DbXRef dbSNP_ssID::ss2420722 XX AssayMethod RFLP Assay [BanII, EcoT38I, Eco24I, FriOI], [BmyI, MhlI, Bsp1286I, SduI] XX SourceID SRC000000412 Citation Emahazion T, et al, Gene 238:315-324, 1999 Submitter Anthony J Brookes (SUB000000001) MeSH Evolution, Molecular MeSH Human MeSH Neurodegenerative Diseases/genetics* MeSH Polymerase Chain Reaction MeSH Polymorphism, Single Nucleotide* MeSH Support, Non-U.S. Govt SourceID SRC000000001 Citation dbSNP_rsID Record // </item> </queryByArrayIdsReturn>
OUTPUT DATA SET
Name	Type	Value
mergeSnpDataReturn	org.w3c.dom.Element	<mergeSnpDataReturn xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="xsd:string">ID HSAY18949 standard; DNA; HUM; 624 BP. XX AC Y18949; XX SV Y18949.1 XX DT 08-OCT-1999 (Rel. 61, Created) DT 08-OCT-1999 (Rel. 61, Last updated, Version 1) XX DE Homo sapiens partial BCL2L2 gene, intronic sequence XX KW BCL2L2 gene. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Primates; Catarrhini; Hominidae; Homo. XX FH Key Location/Qualifiers FT source 1..624 FT /chromosome="14" FT /db_xref="taxon:9606" FT /map="14q11.2-q12" FT /organism="Homo sapiens" FT /tissue_type="blood" FT intron <1..>624 FT /gene="BCL2L2" FT /note="apoptosis regulator bcl-w" FT variation 212 FT /gene="BCL2L2" FT /replace="c" FT variation 256 FT /db_xref="HGBASE:SNP000005065" FT /note="SNP" FT /replace="c" FT variation 283 FT /gene="BCL2L2" FT /replace="c" FT variation 283 FT /db_xref="HGBASE:SNP000005066" FT /note="SNP" FT /replace="t" XX SQ Sequence 624 BP; 152 A; 191 C; 162 G; 118 T; 1 other; aaactacctg aagtcccctc aaggagggtg acagaaaggc ccaagtgccg ctggatgcca 60 aaccctcgtg tgtgagagct agcgccttgc cttaccactc cttgggatcc accttacagt 120 gaaacctagg cctggggaaa gcaggaggcg aatcgtcagg gcagcaaagg ctagaccagg 180 gtctgaatcc aactccggct tccacccagc gntgcggcac ctggccagaa gacgcggctc 240 ccacaagaga gaagggcccg gcctcagcag cgagaaagag cctctcttcg cccccaaggc 300 aggaagtcac cacagtcttg cacaaggcct ctagcatctg tctcacggag tctggcggtg 360 catctcctac tttcccacag cgcctgtcag cacgccatct atttactgag tgaaagatgc 420 taggccaaaa tcagagaaat gagagaacat ggtccatgtc ttccaatgct aggtccagcc 480 ccagtggtca aaggcgcagc cctggccctg catctcctca ttggacgaac atgctcacgc 540 cttcgtaagc acctgtgctc cggtgacctg gcccagatga ttaattccag gttcctgcgg 600 ctttacctgt ctgacaagat aaga 624 // </mergeSnpDataReturn>

SERVICE

http://mygrid.ncl.ac.uk/axis/services/SrsEbiQuery?wsdl

Port

SrsEbiQuery

Operation

queryById

Status

COMPLETE

Start Time

End Time

Name	Type	Value
INPUT DATA SET
usa	org.w3c.dom.Element	<getAccessionNumberReturn xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="xsd:string">embl-AccNumber:Y18949</getAccessionNumberReturn>
OUTPUT DATA SET
Name	Type	Value
queryByIdReturn	org.w3c.dom.Element	<queryByIdReturn xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="xsd:string">ID HSAY18949 standard; DNA; HUM; 624 BP. XX AC Y18949; XX SV Y18949.1 XX DT 08-OCT-1999 (Rel. 61, Created) DT 08-OCT-1999 (Rel. 61, Last updated, Version 1) XX DE Homo sapiens partial BCL2L2 gene, intronic sequence XX KW BCL2L2 gene. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Primates; Catarrhini; Hominidae; Homo. XX RN [2] RP 1-624 RA Emahazion T.; RT ; RL Submitted (15-APR-1999) to the EMBL/GenBank/DDBJ databases. RL T. Emahazion, Biomedical Center, Box 589, S-751 23 Uppsala, SWEDEN XX RN [3] RA Emahazion T., Jobs M., Howell W.M., Siegfried M., Wyoni P.I., Prince J.A., RA Brookes J.A.; RT "Identification of 167 polymorphisms in 88 genes from candidate RT neurodegeneration pathways"; RL Gene 238:315-324(1999). XX FH Key Location/Qualifiers FH FT source 1..624 FT /chromosome="14" FT /db_xref="taxon:9606" FT /organism="Homo sapiens" FT /tissue_type="blood" FT /map="14q11.2-q12" FT intron <1..>624 FT /note="apoptosis regulator bcl-w" FT /gene="BCL2L2" FT variation 212 FT /replace="c" FT /gene="BCL2L2" FT variation 283 FT /replace="c" FT /gene="BCL2L2" XX SQ Sequence 624 BP; 152 A; 191 C; 162 G; 118 T; 1 other; aaactacctg aagtcccctc aaggagggtg acagaaaggc ccaagtgccg ctggatgcca 60 aaccctcgtg tgtgagagct agcgccttgc cttaccactc cttgggatcc accttacagt 120 gaaacctagg cctggggaaa gcaggaggcg aatcgtcagg gcagcaaagg ctagaccagg 180 gtctgaatcc aactccggct tccacccagc gntgcggcac ctggccagaa gacgcggctc 240 ccacaagaga gaagggcccg gcctcagcag cgagaaagag cctctcttcg cccccaaggc 300 aggaagtcac cacagtcttg cacaaggcct ctagcatctg tctcacggag tctggcggtg 360 catctcctac tttcccacag cgcctgtcag cacgccatct atttactgag tgaaagatgc 420 taggccaaaa tcagagaaat gagagaacat ggtccatgtc ttccaatgct aggtccagcc 480 ccagtggtca aaggcgcagc cctggccctg catctcctca ttggacgaac atgctcacgc 540 cttcgtaagc acctgtgctc cggtgacctg gcccagatga ttaattccag gttcctgcgg 600 ctttacctgt ctgacaagat aaga 624 // </queryByIdReturn>

Invoked Services Summary

Status	WSDL	PortType	Operation
COMPLETE	http://mygrid.ncl.ac.uk/axis/services/SrsEbiQuery?wsdl	SrsEbiQuery	queryByArrayIds
COMPLETE	http://mygrid.ncl.ac.uk/axis/services/affymapper?wsdl	AffymetrixMapper	getAccessionNumber
COMPLETE	http://mygrid.ncl.ac.uk/axis/services/SrsEbiQuery?wsdl	SrsEbiQuery	queryHgvbaseByEmblAccNumber
COMPLETE	http://mygrid.ncl.ac.uk/axis/services/EmblSnpEdit?wsdl	SnpFeatureEmblEditor	mergeSnpData
COMPLETE	http://mygrid.ncl.ac.uk/axis/services/SrsEbiQuery?wsdl	SrsEbiQuery	queryById

Provenance stylesheet provenance - 13 June 2003 - ^myGrid post Integration Fest Nottingham