FlowID:MyGrid:Workflow:bioSprocess::1050940545750 alan4 http://www.someplace.org somebody@someplace.org 105 id org.w3c.dom.Element P08099]]> 106 database org.w3c.dom.Element swall]]> 107 formatType org.w3c.dom.Element default]]> Mon Apr 21 16:55:45 BST 2003 Mon Apr 21 16:55:45 BST 2003 Mon Apr 21 16:55:57 BST 2003 false Complete FlowID:MyGrid:Workflow:bioSprocess::1050940545750 EmblFetch getEntry BioFetch http://www.ebi.ac.uk/collab/mygrid/service0/axis/services/urn:emblfetch?wsdl Complete 106 database_id org.w3c.dom.Element swall]]> 105 entry_id org.w3c.dom.Element P08099]]> 107 format org.w3c.dom.Element default]]> -1 return org.w3c.dom.Element ID OPS2_DROME STANDARD; PRT; 381 AA. AC P08099; Q9VE29; DT 01-AUG-1988 (Rel. 08, Created) DT 01-AUG-1988 (Rel. 08, Last sequence update) DT 16-OCT-2001 (Rel. 40, Last annotation update) DE Opsin Rh2 (Ocellar opsin). GN RH2 OR CG16740. OS Drosophila melanogaster (Fruit fly). OC Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; OC Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; OC Ephydroidea; Drosophilidae; Drosophila. OX NCBI_TaxID=7227; RN [1] RP SEQUENCE FROM N.A. RX MEDLINE=86133563; PubMed=2936466; RA Cowman A.F., Zuker C.S., Rubin G.M.; RT "An opsin gene expressed in only one photoreceptor cell type of the RT Drosophila eye."; RL Cell 44:705-710(1986). RN [2] RP SEQUENCE FROM N.A. RC STRAIN=Berkeley; RX MEDLINE=20196006; PubMed=10731132; RA Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., RA Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., RA George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., RA Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X., RA Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., RA Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., RA Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., RA Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., RA Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., RA Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., RA Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., RA Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., RA de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., RA Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., RA Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., RA Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., RA Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., RA Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., RA Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., RA Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., RA Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., RA Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., RA Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., RA Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., RA Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., RA Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., RA Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., RA Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., RA Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., RA Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., RA Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., RA Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., RA Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., RA Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., RA Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., RA Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.; RT "The genome sequence of Drosophila melanogaster."; RL Science 287:2185-2195(2000). RN [3] RP LOCALIZATION OF OPSIN RH2, AND ABSORPTION MAXIMUM. RX MEDLINE=88261498; PubMed=2455230; RA Feiler R., Harris W.A., Kirschfeld K., Wehrhahn C., Zuker C.S.; RT "Targeted misexpression of a Drosophila opsin gene leads to altered RT visual function."; RL Nature 333:737-741(1988). RN [4] RP LOCALIZATION OF OPSIN RH2. RX MEDLINE=88261503; PubMed=2968518; RA Pollock J.A., Benzer S.; RT "Transcript localization of four opsin genes in the three visual RT organs of Drosophila; RH2 is ocellus specific."; RL Nature 333:779-782(1988). CC -!- FUNCTION: VISUAL PIGMENTS ARE THE LIGHT-ABSORBING MOLECULES THAT CC MEDIATE VISION. THEY CONSIST OF AN APOPROTEIN, OPSIN, COVALENTLY CC LINKED TO CIS-RETINAL. CC -!- SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. CC -!- PTM: SOME OR ALL OF THE CARBOXYL-TERMINAL SER OR THR RESIDUES MAY CC BE PHOSPHORYLATED. CC -!- MISCELLANEOUS: OPSIN RH2 IS THE PREDOMINANT OPSIN EXPRESSED IN THE CC DORSAL OCELLI. CC -!- MISCELLANEOUS: OPSIN RH2 HAS AN ABSORPTION MAXIMUM AT 420 NM. CC -!- SIMILARITY: BELONGS TO FAMILY 1 OF G-PROTEIN COUPLED RECEPTORS. CC OPSIN SUBFAMILY. CC -------------------------------------------------------------------------- CC This SWISS-PROT entry is copyright. It is produced through a collaboration CC between the Swiss Institute of Bioinformatics and the EMBL outstation - CC the European Bioinformatics Institute. There are no restrictions on its CC use by non-profit institutions as long as its content is in no way CC modified and this statement is not removed. Usage by and for commercial CC entities requires a license agreement (See http://www.isb-sib.ch/announce/ CC or send an email to license@isb-sib.ch). CC -------------------------------------------------------------------------- DR EMBL; M12896; AAA28734.1; -. DR EMBL; AE003724; AAF55601.1; -. DR PIR; A24058; OOFF2. DR HSSP; P02699; 1BOJ. DR FlyBase; FBgn0003248; Rh2. DR GO; GO:0015053; F:opsin; IDA. DR GO; GO:0007602; P:phototransduction; IGI. DR InterPro; IPR000276; GPCR_Rhodpsn. DR InterPro; IPR001760; Opsin. DR Pfam; PF00001; 7tm_1; 1. DR PRINTS; PR00237; GPCRRHODOPSN. DR PROSITE; PS00237; G_PROTEIN_RECEP_F1_1; 1. DR PROSITE; PS50262; G_PROTEIN_RECEP_F1_2; 1. DR PROSITE; PS00238; OPSIN; 1. KW Photoreceptor; Retinal protein; Transmembrane; Phosphorylation; KW Glycoprotein; G-protein coupled receptor; Vision. FT DOMAIN 1 56 EXTRACELLULAR. FT TRANSMEM 57 81 1 (POTENTIAL). FT DOMAIN 82 93 CYTOPLASMIC. FT TRANSMEM 94 119 2 (POTENTIAL). FT DOMAIN 120 133 EXTRACELLULAR. FT TRANSMEM 134 153 3 (POTENTIAL). FT DOMAIN 154 172 CYTOPLASMIC. FT TRANSMEM 173 196 4 (POTENTIAL). FT DOMAIN 197 220 EXTRACELLULAR. FT TRANSMEM 221 248 5 (POTENTIAL). FT DOMAIN 249 283 CYTOPLASMIC. FT TRANSMEM 284 307 6 (POTENTIAL). FT DOMAIN 308 314 EXTRACELLULAR. FT TRANSMEM 315 339 7 (POTENTIAL). FT DOMAIN 340 381 CYTOPLASMIC. FT CARBOHYD 27 27 N-LINKED (GLCNAC...) (PROBABLE). FT DISULFID 130 207 POTENTIAL. FT BINDING 326 326 RETINAL CHROMOPHORE. SQ SEQUENCE 381 AA; 42722 MW; 628322D228396F9D CRC64; MERSHLPETP FDLAHSGPRF QAQSSGNGSV LDNVLPDMAH LVNPYWSRFA PMDPMMSKIL GLFTLAIMII SCCGNGVVVY IFGGTKSLRT PANLLVLNLA FSDFCMMASQ SPVMIINFYY ETWVLGPLWC DIYAGCGSLF GCVSIWSMCM IAFDRYNVIV KGINGTPMTI KTSIMKILFI WMMAVFWTVM PLIGWSAYVP EGNLTACSID YMTRMWNPRS YLITYSLFVY YTPLFLICYS YWFIIAAVAA HEKAMREQAK KMNVKSLRSS EDCDKSAEGK LAKVALTTIS LWFMAWTPYL VICYFGLFKI DGLTPLTTIW GATFAKTSAV YNPIVYGISH PKYRIVLKEK CPMCVFGNTD EPKPDAPASD TETTSEADSK A //]]> SwissProtProcessor getMedlineIds ExtractMedRefs http://www.ebi.ac.uk/collab/mygrid/service0/axis/services/urn:swissprotprocessor?wsdl Complete -1 swissprot org.w3c.dom.Element ID OPS2_DROME STANDARD; PRT; 381 AA. AC P08099; Q9VE29; DT 01-AUG-1988 (Rel. 08, Created) DT 01-AUG-1988 (Rel. 08, Last sequence update) DT 16-OCT-2001 (Rel. 40, Last annotation update) DE Opsin Rh2 (Ocellar opsin). GN RH2 OR CG16740. OS Drosophila melanogaster (Fruit fly). OC Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; OC Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; OC Ephydroidea; Drosophilidae; Drosophila. OX NCBI_TaxID=7227; RN [1] RP SEQUENCE FROM N.A. RX MEDLINE=86133563; PubMed=2936466; RA Cowman A.F., Zuker C.S., Rubin G.M.; RT "An opsin gene expressed in only one photoreceptor cell type of the RT Drosophila eye."; RL Cell 44:705-710(1986). RN [2] RP SEQUENCE FROM N.A. RC STRAIN=Berkeley; RX MEDLINE=20196006; PubMed=10731132; RA Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., RA Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., RA George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., RA Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X., RA Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., RA Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., RA Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., RA Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., RA Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., RA Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., RA Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., RA Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., RA de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., RA Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., RA Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., RA Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., RA Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., RA Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., RA Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., RA Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., RA Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., RA Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., RA Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., RA Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., RA Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., RA Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., RA Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., RA Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., RA Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., RA Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., RA Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., RA Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., RA Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., RA Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., RA Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., RA Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.; RT "The genome sequence of Drosophila melanogaster."; RL Science 287:2185-2195(2000). RN [3] RP LOCALIZATION OF OPSIN RH2, AND ABSORPTION MAXIMUM. RX MEDLINE=88261498; PubMed=2455230; RA Feiler R., Harris W.A., Kirschfeld K., Wehrhahn C., Zuker C.S.; RT "Targeted misexpression of a Drosophila opsin gene leads to altered RT visual function."; RL Nature 333:737-741(1988). RN [4] RP LOCALIZATION OF OPSIN RH2. RX MEDLINE=88261503; PubMed=2968518; RA Pollock J.A., Benzer S.; RT "Transcript localization of four opsin genes in the three visual RT organs of Drosophila; RH2 is ocellus specific."; RL Nature 333:779-782(1988). CC -!- FUNCTION: VISUAL PIGMENTS ARE THE LIGHT-ABSORBING MOLECULES THAT CC MEDIATE VISION. THEY CONSIST OF AN APOPROTEIN, OPSIN, COVALENTLY CC LINKED TO CIS-RETINAL. CC -!- SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. CC -!- PTM: SOME OR ALL OF THE CARBOXYL-TERMINAL SER OR THR RESIDUES MAY CC BE PHOSPHORYLATED. CC -!- MISCELLANEOUS: OPSIN RH2 IS THE PREDOMINANT OPSIN EXPRESSED IN THE CC DORSAL OCELLI. CC -!- MISCELLANEOUS: OPSIN RH2 HAS AN ABSORPTION MAXIMUM AT 420 NM. CC -!- SIMILARITY: BELONGS TO FAMILY 1 OF G-PROTEIN COUPLED RECEPTORS. CC OPSIN SUBFAMILY. CC -------------------------------------------------------------------------- CC This SWISS-PROT entry is copyright. It is produced through a collaboration CC between the Swiss Institute of Bioinformatics and the EMBL outstation - CC the European Bioinformatics Institute. There are no restrictions on its CC use by non-profit institutions as long as its content is in no way CC modified and this statement is not removed. Usage by and for commercial CC entities requires a license agreement (See http://www.isb-sib.ch/announce/ CC or send an email to license@isb-sib.ch). CC -------------------------------------------------------------------------- DR EMBL; M12896; AAA28734.1; -. DR EMBL; AE003724; AAF55601.1; -. DR PIR; A24058; OOFF2. DR HSSP; P02699; 1BOJ. DR FlyBase; FBgn0003248; Rh2. DR GO; GO:0015053; F:opsin; IDA. DR GO; GO:0007602; P:phototransduction; IGI. DR InterPro; IPR000276; GPCR_Rhodpsn. DR InterPro; IPR001760; Opsin. DR Pfam; PF00001; 7tm_1; 1. DR PRINTS; PR00237; GPCRRHODOPSN. DR PROSITE; PS00237; G_PROTEIN_RECEP_F1_1; 1. DR PROSITE; PS50262; G_PROTEIN_RECEP_F1_2; 1. DR PROSITE; PS00238; OPSIN; 1. KW Photoreceptor; Retinal protein; Transmembrane; Phosphorylation; KW Glycoprotein; G-protein coupled receptor; Vision. FT DOMAIN 1 56 EXTRACELLULAR. FT TRANSMEM 57 81 1 (POTENTIAL). FT DOMAIN 82 93 CYTOPLASMIC. FT TRANSMEM 94 119 2 (POTENTIAL). FT DOMAIN 120 133 EXTRACELLULAR. FT TRANSMEM 134 153 3 (POTENTIAL). FT DOMAIN 154 172 CYTOPLASMIC. FT TRANSMEM 173 196 4 (POTENTIAL). FT DOMAIN 197 220 EXTRACELLULAR. FT TRANSMEM 221 248 5 (POTENTIAL). FT DOMAIN 249 283 CYTOPLASMIC. FT TRANSMEM 284 307 6 (POTENTIAL). FT DOMAIN 308 314 EXTRACELLULAR. FT TRANSMEM 315 339 7 (POTENTIAL). FT DOMAIN 340 381 CYTOPLASMIC. FT CARBOHYD 27 27 N-LINKED (GLCNAC...) (PROBABLE). FT DISULFID 130 207 POTENTIAL. FT BINDING 326 326 RETINAL CHROMOPHORE. SQ SEQUENCE 381 AA; 42722 MW; 628322D228396F9D CRC64; MERSHLPETP FDLAHSGPRF QAQSSGNGSV LDNVLPDMAH LVNPYWSRFA PMDPMMSKIL GLFTLAIMII SCCGNGVVVY IFGGTKSLRT PANLLVLNLA FSDFCMMASQ SPVMIINFYY ETWVLGPLWC DIYAGCGSLF GCVSIWSMCM IAFDRYNVIV KGINGTPMTI KTSIMKILFI WMMAVFWTVM PLIGWSAYVP EGNLTACSID YMTRMWNPRS YLITYSLFVY YTPLFLICYS YWFIIAAVAA HEKAMREQAK KMNVKSLRSS EDCDKSAEGK LAKVALTTIS LWFMAWTPYL VICYFGLFKI DGLTPLTTIW GATFAKTSAV YNPIVYGISH PKYRIVLKEK CPMCVFGNTD EPKPDAPASD TETTSEADSK A //]]> -1 return org.w3c.dom.Element 86133563 20196006 88261498 88261503 ]]>