Useful links

• http://www.r-project.org - Because google search for 'R' doesn't work

About Micro-Array Analysis

See MicroArray for more info.

A typical workflow (in terms of what the scientists do rather than any formal definition) is attached to this page in excel form.

• http://www.ebi.ac.uk/expressionprofiler/
• http://www.bioconductor.org - BioConductor^? is an open source and open development software project for the analysis and comprehension of genomic data.

Forwarded mail from Expression Profiler team (see attachments)

As we promised, here's a draft of requirements for Taverna to interface to EP and R-Bioconductor. It's a draft, but sets some lofty goals, which will for sure, be refined, augmented, etc.

In the short-term (to restate what's in the attached doc), we'd like to implement a simple data processing pipeline (workflow) for microarray data, using EP components where possible and some R scripts where no EP component exists. This should be relatively easy to construct if we work together.

Let us know what you think of this document.

Best regards,

--Misha

Using the R processor

Check out UsingRProcessor.

-- TomOinn - 17 Mar 2006

• EP-EMAAS-R-Taverna-Requirements.doc: Requirements from EP team

• workflows.xls: Existing prototype array 'workflow'