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Mygrid Web > TavernaWorkbench > BiologicalWebServices
Mygrid Web > TavernaWorkbench > BiologicalWebServicesBiological web services
This document lists the appropriate links of all known biological web services. Its purpose is to provide a registry of all bio services that can be accessed through a client such as Taverna. It is organised by the provider or host of the service(s). Feel free to add your biological web services or contact Franck Tanoh for help. Many of the services have been annotated for Feta and can also be searched and used from Taverna by accessing the feta plugin for Taverna.- Major data centres
- Smaller projects and databases
- Kanehisa Laboratory, Kyoto, Japan
- myGrid, Manchester, UK
- BASIS, University of Newcastle, UK
- Biomolecular Interaction Network Database, BIND, University of Toronto, Canada
- GeneCruiser, Broad Institute, Harvard-MIT, USA
- Genomics and Bioinformatics Group: Laboratory of Molecular Pharmacology, USA
- BioMoby
- Virginia Bioinformatics Institute, USA
- Center for Biological Sequence Analysis, CBS, Technical University of Denmark
- Helmholtz open bioinformatics technology, Germany
- Information Hyperlinked over Proteins, iHOP
- SIGENAE project, France
- The Nottingham Arabidopsis Stock Centre, NASC, UK
- Bioinformatics Competence Center Braunschweig, Germany
- Gene Ontology visualisation, Goviz
- Bioinformatics group, Italy
- The National Centre for Text Mining, NaCTeM
- Centro de Ciencias Genómicas, UNAM, Mexico
- e-Fungi, Manchester, UK
- FUGE bioinformatics platform, Norway
- Institute of Bioinformatics, Tsinghua University, China
- EMAP, Edinburgh Mouse Atlas Project, UK
Major data centres
EMBL-EBI, UK
| Overview EBI Web Services | WSDL list | References | Not annotated for Feta |
|---|---|---|---|
| Soaplab | Service list | References | Annotation for Feta... ongoing |
| SBO | Service list | WSDL file | Not annotated for Feta |
DDBJ, Japan
| DNA Data Bank of Japan (DDBJ) | Service list and WSDL files | References | Annotated for Feta |
|---|
NCBI, USA
| Entrez Utilities | WSDL | Help | Not annotated for Feta |
|---|---|---|---|
| Lite version of Entrez Utilities | WSDL | Not Annotated for Feta | |
| Entrez EFetch | WSDL | Not annotated for Feta | |
| Entrez EFetch for PubMed and nlmCatalog only | WSDL | Not annotated for Feta |
PDBJ, Japan
| Protein Data Bank of Japan (PDBJ) | WSDL | Descriptions | References | Not annotated for Feta |
|---|
Smaller projects and databases
Kanehisa Laboratory, Kyoto, Japan
| Kanehisa Laboratory | Kyoto Encyclopedia of Genes and Genomes (KEGG) | WSDL | Documentation | References | Annotated for Feta |
|---|
myGrid, Manchester, UK
| myGrid | myGrid Soaplab services and WSDL links | Reference | Not annotated for Feta |
|---|
BASIS, University of Newcastle, UK
| BASIS: Biology of Ageing e-Science Integration and Simulation System | WSDL | Reference | Not annotated for Feta |
|---|
Biomolecular Interaction Network Database, BIND, University of Toronto, Canada
| Biomolecular Interaction Network Database | WSDL | Reference | Database no more public | Annotated for Feta |
|---|
GeneCruiser, Broad Institute, Harvard-MIT, USA
| GeneCruiser | WSDL | Reference | Not annotated for Feta |
|---|
Genomics and Bioinformatics Group: Laboratory of Molecular Pharmacology, USA
| Genomics and Bioinformatics Group | GoMiner Web Service Interface | WSDL | References | Not annotated for Feta |
|---|
BioMoby
BioMoby  | Reference | Taverna is one of the fully-featured client for BioMoby web services | BioMoby web services list |
|---|
Virginia Bioinformatics Institute, USA
| PathPort: the Pathogen Portal | Service list and WSDL files | Reference | Annotated for Feta |
|---|
Center for Biological Sequence Analysis, CBS, Technical University of Denmark
| CSB | Service list | Not annotated for Feta |
|---|
Helmholtz open bioinformatics technology, Germany
| Helmholtz open bioinformatics | Service list and WSDL files | Not annotated for Feta |
|---|
Information Hyperlinked over Proteins, iHOP
| iHOP | Service list | WSDL | Reference | Not annotated for Feta |
|---|
SIGENAE project, France
| SIGENAE | Service list | WSDL | Not annotated for Feta |
|---|
The Nottingham Arabidopsis Stock Centre, NASC, UK
| NASC's Bioinformatics Webservices | Soaplab | Not annotated for Feta |
|---|
Bioinformatics Competence Center Braunschweig, Germany
| Procaryotic Database of gene Regulation (PRODORIC) | WSDL | Documentation | Not annotated for Feta |
|---|---|---|---|
| Prediction of signal peptides (PrediSi) | WSDL | References | Not annotated for Feta |
| FeatureScan | WSDL | References | Not annotated for Feta |
Gene Ontology visualisation, Goviz
| Gene Ontology | Service list | WSDL | Annotated for Feta |
|---|
Bioinformatics group, Italy
| Common Access to Biological Resources and Information (CABRI) | Soaplab | Reference | Not annoated for Feta |
|---|
The National Centre for Text Mining, NaCTeM
| NaCTeM | TerMine | WSDL | Not annotated for Feta |
|---|
Centro de Ciencias Genómicas, UNAM, Mexico
| Centro de Ciencias Genómicas | TFmodeller | WSDL | Documentation | References | Annotated for Feta |
|---|
e-Fungi, Manchester, UK
| e-Fungi | WSDL | Documentation | Not annotated for Feta |
|---|
FUGE bioinformatics platform, Norway
| FUGE bioinformatics platform | Service list, WSDL files and Documentation | Not annotated for Feta |
|---|
Institute of Bioinformatics, Tsinghua University, China
| Institute of Bioinformatics, Tsinghua University | WSDL | Documentation | References | Not annotated for Feta |
|---|
EMAP, Edinburgh Mouse Atlas Project, UK
| EMAP, Edinburgh Mouse Atlas Project | WSDL | Documentation | Not annotated for Feta |
|---|
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al-ama
al-ana
al-asi
al-bbw
al-bds
al-blo
al-boo
al-ebo
al-foo
al-gro
al-gy
al-han
al-har
al-int
al-lat
al-les
al-mat
al-mil
al-pan
al-par
al-pis
al-shm
al-tee
al-voy
ce-ama
ce-ana
ce-asi
ce-bbw
ce-bds
ce-blo
ce-boo
ce-ebo
ce-gy
ce-har
ce-int
ce-lat
ce-les
ce-mat
ce-mil
ce-pan
ce-pis
ce-shm
ce-tee
ce-voy
vi-ama
vi-ana
vi-ani
vi-asi
vi-bbw
vi-bds
vi-blo
vi-boo
vi-ebo
vi-foo
vi-gro
vi-gy
vi-han
vi-har
vi-inc
vi-int
vi-lat
vi-les
vi-mat
vi-mil
vi-pan
vi-par
vi-pis
vi-shm
vi-tee
vi-uni
vi-voy
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