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r41 - 29 Jul 2009 - 14:04:40 - StianSoilandYou are here: myGrid wiki >  Mygrid Web  > TavernaWorkbench > BiologicalWebServices

Biological web services

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Warning: This page is deprecated and no longer updated

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For updated service descriptions, see BioCatalogue

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This document lists the appropriate links of all known biological web services. Its purpose is to provide a registry of all bio services that can be accessed through a client such as Taverna. It is organised by the provider or host of the service(s). To add your biological web services to the list, please contact Franck Tanoh.

Many of the services have been annotated and can be retrieved and used from Taverna by accessing the feta plugin for Taverna.

Note that

  • you don’t have to list your services here before accessing them through Taverna.
  • the services listed here are not by default in Taverna; you can manually add them to the Taverna workbench (see Taverna Manual ).
  • there are services available in many domains other than biology. This list only mentions those in biology.

All the services listed here will soon move to BioCatalogue

Google Custom Search

Major data centres

EMBL-EBI, UK

Overview EBI Web Services WSDL list References Not annotated for Feta
Soaplab Service list References Annotation for Feta... ongoing
SBO Service list WSDL file Not annotated for Feta

DDBJ, Japan

DNA Data Bank of Japan (DDBJ) Service list and WSDL files References Annotated for Feta

NCBI, USA

Entrez Utilities WSDL Help Not annotated for Feta
Lite version of Entrez Utilities WSDL Not Annotated for Feta
Entrez EFetch WSDL Not annotated for Feta
Entrez EFetch for PubMed and nlmCatalog only WSDL Not annotated for Feta

PDBJ, Japan

Protein Data Bank of Japan (PDBJ) Service list References Not annotated for Feta

Smaller projects and databases

Kanehisa Laboratory, Kyoto, Japan

Kanehisa Laboratory Kyoto Encyclopedia of Genes and Genomes (KEGG) WSDL Documentation References Annotated for Feta

myGrid, Manchester, UK

myGrid myGrid Soaplab services and WSDL links Reference Not annotated for Feta

BASIS, University of Newcastle, UK

BASIS: Biology of Ageing e-Science Integration and Simulation System WSDL Reference Not annotated for Feta

Biomolecular Interaction Network Database, BIND, University of Toronto, Canada

Biomolecular Interaction Network Database WSDL Reference Database no more public Annotated for Feta

GeneCruiser, Broad Institute, Harvard-MIT, USA

GeneCruiser WSDL Reference Not annotated for Feta

Genomics and Bioinformatics Group: Laboratory of Molecular Pharmacology, USA

Genomics and Bioinformatics Group GoMiner Web Service Interface WSDL References Not annotated for Feta

BioMoby

BioMoby sort Reference sort Taverna is one of the fully-featured client for BioMoby web services sort BioMoby web services list sort

Virginia Bioinformatics Institute, USA

PathPort: the Pathogen Portal Service list and WSDL files Reference Annotated for Feta

Center for Biological Sequence Analysis, CBS, Technical University of Denmark

CSB Service list Not annotated for Feta

Helmholtz open bioinformatics technology, Germany

Helmholtz open bioinformatics Service list and WSDL files Not annotated for Feta

Information Hyperlinked over Proteins, iHOP

iHOP Service list WSDL Reference Not annotated for Feta

SIGENAE project, France

SIGENAE Service list WSDL Not annotated for Feta

The Nottingham Arabidopsis Stock Centre, NASC, UK

NASC's Bioinformatics Webservices Soaplab Not annotated for Feta

Bioinformatics Competence Center Braunschweig, Germany

Procaryotic Database of gene Regulation (PRODORIC) WSDL Documentation Not annotated for Feta
Prediction of signal peptides (PrediSi) WSDL References Not annotated for Feta
FeatureScan WSDL References Not annotated for Feta

Gene Ontology visualisation, Goviz

Gene Ontology Service list WSDL Annotated for Feta

Bioinformatics group, Italy

Common Access to Biological Resources and Information (CABRI) Soaplab Reference Not annoated for Feta

The National Centre for Text Mining, NaCTeM

NaCTeM TerMine WSDL Not annotated for Feta

Centro de Ciencias Genómicas, UNAM, Mexico

Centro de Ciencias Genómicas TFmodeller WSDL Documentation References Annotated for Feta

e-Fungi, Manchester, UK

e-Fungi WSDL Documentation Not annotated for Feta

FUGE bioinformatics platform, Norway

FUGE bioinformatics platform Service list, WSDL files and Documentation Not annotated for Feta

Institute of Bioinformatics, Tsinghua University, China

Institute of Bioinformatics, Tsinghua University WSDL Documentation References Not annotated for Feta

EMAP, Edinburgh Mouse Atlas Project, UK

EMAP, Edinburgh Mouse Atlas Project WSDL Documentation Not annotated for Feta

The Chemical Informatics and Cyberinfrastructure Collaboratory (CICC), Indiana University, US

CICC Service list Not annotated for Feta

Center for Bioinformatics, CBI, China

Center for Bioinformatics WSDL Documentation Not annotated for Feta
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