Hierarchy For All Packages

Package Hierarchies:

com.jhlabs.image, net.iharder, net.sf.taverna.example, net.sf.taverna.perspectives, net.sf.taverna.raven, net.sf.taverna.raven.appconfig, net.sf.taverna.raven.appconfig.bootstrap, net.sf.taverna.raven.appconfig.config, net.sf.taverna.raven.helloworld, net.sf.taverna.raven.launcher, net.sf.taverna.raven.log, net.sf.taverna.raven.plugins, net.sf.taverna.raven.plugins.event, net.sf.taverna.raven.plugins.ui, net.sf.taverna.raven.prelauncher, net.sf.taverna.raven.profile, net.sf.taverna.raven.profile.ui, net.sf.taverna.raven.repository, net.sf.taverna.raven.repository.impl, net.sf.taverna.raven.spi, net.sf.taverna.raven.util, net.sf.taverna.t2.lang.io, net.sf.taverna.t2.lang.observer, net.sf.taverna.t2.lang.ui, net.sf.taverna.t2.lang.ui.icons, net.sf.taverna.t2.partition, net.sf.taverna.t2.partition.algorithms, net.sf.taverna.t2.partition.ui, net.sf.taverna.t2.spi, net.sf.taverna.t2.util.beanable, net.sf.taverna.t2.util.beanable.jaxb, net.sf.taverna.tools, net.sf.taverna.update.plugin, net.sf.taverna.update.plugin.event, net.sf.taverna.update.plugin.ui, net.sf.taverna.update.profile, net.sf.taverna.update.profile.ui, net.sf.taverna.utils, net.sf.taverna.x2008.xml.plugins, net.sf.taverna.x2008.xml.plugins.impl, net.sf.taverna.zaria, net.sf.taverna.zaria.progress, net.sf.taverna.zaria.raven, net.sourceforge.taverna.baclava, net.sourceforge.taverna.biojava, net.sourceforge.taverna.io, net.sourceforge.taverna.publish, net.sourceforge.taverna.publish.local, net.sourceforge.taverna.publish.p2p, net.sourceforge.taverna.publish.sftp, net.sourceforge.taverna.publish.webdav, net.sourceforge.taverna.scuflui.renderers, net.sourceforge.taverna.scuflworkers, net.sourceforge.taverna.scuflworkers.biojava, net.sourceforge.taverna.scuflworkers.bsf, net.sourceforge.taverna.scuflworkers.image, net.sourceforge.taverna.scuflworkers.io, net.sourceforge.taverna.scuflworkers.jdbc, net.sourceforge.taverna.scuflworkers.ncbi, net.sourceforge.taverna.scuflworkers.ui, net.sourceforge.taverna.scuflworkers.xml, net.sourceforge.taverna.util, nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor, nl.utwente.ewi.hmi.taverna.scuflworkers.rshell, org.apache.bsf, org.biomoby.client.taverna.plugin, org.biomoby.client.taverna.plugin.test, org.embl.ebi.escience.baclava, org.embl.ebi.escience.baclava.factory, org.embl.ebi.escience.baclava.iterator, org.embl.ebi.escience.baclava.lsid, org.embl.ebi.escience.baclava.store, org.embl.ebi.escience.baclava.store.test, org.embl.ebi.escience.baclava.tools, org.embl.ebi.escience.scufl, org.embl.ebi.escience.scufl.enactor, org.embl.ebi.escience.scufl.enactor.event, org.embl.ebi.escience.scufl.enactor.implementation, org.embl.ebi.escience.scufl.parser, org.embl.ebi.escience.scufl.provenance.process, org.embl.ebi.escience.scufl.semantics, org.embl.ebi.escience.scufl.shared, org.embl.ebi.escience.scufl.tools, org.embl.ebi.escience.scufl.view, org.embl.ebi.escience.scuflui, org.embl.ebi.escience.scuflui.actions, org.embl.ebi.escience.scuflui.dnd, org.embl.ebi.escience.scuflui.facets, org.embl.ebi.escience.scuflui.graph, org.embl.ebi.escience.scuflui.graph.model, org.embl.ebi.escience.scuflui.renderers, org.embl.ebi.escience.scuflui.results, org.embl.ebi.escience.scuflui.shared, org.embl.ebi.escience.scuflui.spi, org.embl.ebi.escience.scuflui.treeview, org.embl.ebi.escience.scuflui.workbench, org.embl.ebi.escience.scuflui.workbench.scavenger.spi, org.embl.ebi.escience.scuflworkers, org.embl.ebi.escience.scuflworkers.apiconsumer, org.embl.ebi.escience.scuflworkers.beanshell, org.embl.ebi.escience.scuflworkers.biomart, org.embl.ebi.escience.scuflworkers.biomoby, org.embl.ebi.escience.scuflworkers.dependency, org.embl.ebi.escience.scuflworkers.inferno, org.embl.ebi.escience.scuflworkers.java, org.embl.ebi.escience.scuflworkers.java.actions, org.embl.ebi.escience.scuflworkers.notification, org.embl.ebi.escience.scuflworkers.rdfgenerator, org.embl.ebi.escience.scuflworkers.rserv, org.embl.ebi.escience.scuflworkers.soaplab, org.embl.ebi.escience.scuflworkers.soaplab.test, org.embl.ebi.escience.scuflworkers.stringconstant, org.embl.ebi.escience.scuflworkers.talisman, org.embl.ebi.escience.scuflworkers.talisman.test, org.embl.ebi.escience.scuflworkers.web, org.embl.ebi.escience.scuflworkers.workflow, org.embl.ebi.escience.scuflworkers.wsdl, org.embl.ebi.escience.treetable, org.embl.ebi.escience.utils, uk.ac.soton.itinnovation.taverna.enactor.broker, uk.ac.soton.itinnovation.taverna.enactor.entities

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • org.embl.ebi.escience.scuflworkers.workflow.AddNestedWorkflowAction.OpenNestedWorkflowFromURLAction
    • org.embl.ebi.escience.scuflui.actions.OpenWorkflowFromFileAction
      • org.embl.ebi.escience.scuflui.actions.ImportWorkflowFromFileAction
      • org.embl.ebi.escience.scuflui.actions.OpenWorkflowFromURLAction
        • org.embl.ebi.escience.scuflui.actions.ImportWorkflowFromURLAction
    • org.embl.ebi.escience.scuflui.actions.RunWorkflowAction
    • org.embl.ebi.escience.scuflui.actions.SaveWorkflowAction
    • org.embl.ebi.escience.scuflui.actions.ScuflModelAction
      • org.embl.ebi.escience.scuflui.actions.AddDataConstraintAction
      • org.embl.ebi.escience.scuflui.actions.AddInputAction
      • org.embl.ebi.escience.scuflui.actions.AddOutputAction
      • org.embl.ebi.escience.scuflui.actions.ModelObjectAction
        • org.embl.ebi.escience.scuflui.actions.EditMetadataAction
        • org.embl.ebi.escience.scuflui.actions.RemoveAction
        • org.embl.ebi.escience.scuflui.actions.RenameAction
        • org.embl.ebi.escience.scuflui.actions.SetDefaultValueAction
      • org.embl.ebi.escience.scuflui.actions.ResetAction
      • org.embl.ebi.escience.scuflui.actions.ScuflModelActionSPI
        • org.embl.ebi.escience.scuflworkers.workflow.AddNestedWorkflowAction
    • org.embl.ebi.escience.scuflui.workbench.Workbench.ExitAction
    • net.sf.taverna.zaria.ZRavenComponent.NameComponentAction
    • net.sf.taverna.zaria.ZRavenComponent.SelectInstanceAction
    • net.sf.taverna.zaria.ZRavenComponent.SelectNamedInstanceAction
    • net.sf.taverna.zaria.ZRavenComponent.SelectSPIAction
    • net.sf.taverna.zaria.ZRavenComponent.ToggleScrollPaneAction
  • net.sf.taverna.raven.spi.AbstractArtifactFilter (implements net.sf.taverna.raven.spi.ArtifactFilter)
    • net.sf.taverna.raven.spi.LatestVersionFilter
    • net.sf.taverna.raven.spi.Profile
  • com.jhlabs.image.AbstractBufferedImageOp (implements java.awt.image.BufferedImageOp)
    • com.jhlabs.image.BoxBlurFilter
  • javax.swing.AbstractCellEditor (implements javax.swing.CellEditor, java.io.Serializable)
    • javax.swing.DefaultCellEditor (implements javax.swing.table.TableCellEditor, javax.swing.tree.TreeCellEditor)
      • org.embl.ebi.escience.treetable.JTreeTable.TreeTableCellEditor
      • org.embl.ebi.escience.scuflui.treeview.ScuflModelTreeTable.ScuflModelTreeTableCellEditor
  • org.embl.ebi.escience.treetable.AbstractCellEditor (implements javax.swing.CellEditor)
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractSet<E> (implements java.util.Set<E>)
      • java.util.HashSet<E> (implements java.lang.Cloneable, java.io.Serializable, java.util.Set<E>)
        • net.sf.taverna.t2.partition.HashSetModel<ItemType> (implements net.sf.taverna.t2.partition.SetModel<ItemType>)
  • net.sf.taverna.tools.AbstractConfiguration
    • net.sf.taverna.utils.Log4JConfiguration
    • net.sf.taverna.utils.MyGridConfiguration
    • net.sf.taverna.tools.ProxyConfiguration
    • net.sf.taverna.tools.RavenProperties
  • net.sf.taverna.raven.appconfig.bootstrap.AbstractConfiguration
    • net.sf.taverna.raven.appconfig.config.Log4JConfiguration
    • net.sf.taverna.raven.appconfig.config.MyGridConfiguration
    • net.sf.taverna.raven.appconfig.bootstrap.ProxyConfiguration
    • net.sf.taverna.raven.appconfig.bootstrap.RavenProperties
  • net.sf.taverna.t2.spi.AbstractDummySPI (implements net.sf.taverna.t2.spi.DummySPI)
  • net.sourceforge.taverna.scuflworkers.ncbi.AbstractEFetchWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
    • net.sourceforge.taverna.scuflworkers.ncbi.EFetchWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.LocusLinkWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.NucleotideFastaWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.NucleotideGBSeqWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.NucleotideINSDSeqXMLWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.NucleotideTinySeqXMLWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.ProteinFastaWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.ProteinGBSeqWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.ProteinINSDSeqXMLWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.ProteinTinySeqXMLWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.PubMedEFetchWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.PubMedESearchWorker
  • javax.swing.AbstractListModel (implements javax.swing.ListModel, java.io.Serializable)
    • net.sf.taverna.update.plugin.ui.PluginListModel (implements net.sf.taverna.update.plugin.event.PluginManagerListener)
    • net.sf.taverna.raven.plugins.ui.PluginListModel (implements net.sf.taverna.raven.plugins.event.PluginManagerListener)
    • net.sf.taverna.raven.profile.ui.ProfileVersionListModel
    • net.sf.taverna.update.profile.ui.ProfileVersionListModel
  • net.sourceforge.taverna.scuflworkers.ncbi.AbstractNCBIWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
    • net.sourceforge.taverna.scuflworkers.ncbi.EntrezGeneWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.EntrezProteinWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.HomoloGeneWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.INSDSeqXMLWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.NucleotideXMLWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.OMIMWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.PubMedSearchWorker
    • net.sourceforge.taverna.scuflworkers.ncbi.SNPWorker
  • net.sf.taverna.perspectives.AbstractPerspective (implements net.sf.taverna.perspectives.PerspectiveSPI)
    • net.sf.taverna.perspectives.DesignPerspective (implements net.sf.taverna.perspectives.WorkflowPerspective)
    • net.sf.taverna.perspectives.EnactPerspective
  • org.embl.ebi.escience.scuflui.actions.AbstractProcessorAction (implements org.embl.ebi.escience.scuflui.spi.ProcessorActionSPI)
    • org.biomoby.client.taverna.plugin.AddParserAction
    • org.biomoby.client.taverna.plugin.BiomobyAction
    • org.biomoby.client.taverna.plugin.BiomobyObjectAction
    • org.biomoby.client.taverna.plugin.BiomobyWidgetAction
    • org.biomoby.client.taverna.plugin.ConfigureMobyServiceAction
    • org.embl.ebi.escience.scuflworkers.java.actions.FlattenListEditAction
    • org.embl.ebi.escience.scuflworkers.java.actions.SliceListEditAction
    • org.embl.ebi.escience.scuflworkers.soaplab.SoaplabDescriberPanel
  • net.sf.taverna.raven.appconfig.AbstractPropThreadTest
    • net.sf.taverna.raven.appconfig.TestApplicationConfig
    • net.sf.taverna.raven.launcher.TestPreLauncher
  • org.embl.ebi.escience.scuflui.renderers.AbstractRenderer (implements org.embl.ebi.escience.scuflui.spi.RendererSPI)
    • org.embl.ebi.escience.scuflui.renderers.AbstractRenderer.ByJavaClass
      • org.embl.ebi.escience.scuflui.renderers.AWTComponentRenderer
    • org.embl.ebi.escience.scuflui.renderers.AbstractRenderer.ByMimeType
      • org.embl.ebi.escience.scuflui.renderers.AbstractRenderer.ByPattern
        • org.embl.ebi.escience.scuflui.renderers.Image
        • net.sourceforge.taverna.scuflui.renderers.SVGRenderer (implements org.embl.ebi.escience.scuflui.spi.RendererSPI)
        • org.embl.ebi.escience.scuflui.renderers.Text
        • org.embl.ebi.escience.scuflui.renderers.TextHtml
        • org.embl.ebi.escience.scuflui.renderers.TextRtf
        • org.embl.ebi.escience.scuflui.renderers.TextTavernaWebUrl
        • org.embl.ebi.escience.scuflui.renderers.TextTavernaWebUrlFetcher
        • org.embl.ebi.escience.scuflui.renderers.TextXGraphviz
        • org.embl.ebi.escience.scuflui.renderers.TextXml
      • org.embl.ebi.escience.scuflui.renderers.JMolRenderer
      • org.embl.ebi.escience.scuflui.renderers.SeqVistaRenderer
    • org.embl.ebi.escience.scuflui.renderers.AbstractRenderer.BySemanticType
  • net.sourceforge.taverna.publish.AbstractRepository (implements net.sourceforge.taverna.publish.Repository)
    • net.sourceforge.taverna.publish.p2p.JxtaRepository
    • net.sourceforge.taverna.publish.local.LocalRepository (implements net.sourceforge.taverna.publish.Repository)
    • net.sourceforge.taverna.publish.sftp.SFTPRepository (implements net.sourceforge.taverna.publish.Repository)
    • net.sourceforge.taverna.publish.webdav.WebDAVRepository (implements net.sourceforge.taverna.publish.Repository)
  • net.sourceforge.taverna.io.AbstractStreamProcessor (implements net.sourceforge.taverna.io.StreamProcessor)
    • net.sourceforge.taverna.io.FileStreamProcessor (implements net.sourceforge.taverna.io.StreamProcessor)
    • net.sourceforge.taverna.io.GetStreamProcessor (implements net.sourceforge.taverna.io.StreamProcessor)
    • net.sourceforge.taverna.io.PostStreamProcessor (implements net.sourceforge.taverna.io.StreamProcessor)
    • net.sourceforge.taverna.io.ReplaceTextFileProcessor
  • net.sourceforge.taverna.io.AbstractStreamTransmitter (implements net.sourceforge.taverna.io.StreamTransmitter)
    • net.sourceforge.taverna.io.GetStreamTransmitter
    • net.sourceforge.taverna.io.PostStreamTransmitter
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • org.embl.ebi.escience.scuflui.EnactorStatusTableModel
    • org.embl.ebi.escience.treetable.TreeTableModelAdapter
  • uk.ac.soton.itinnovation.freefluo.core.task.AbstractTask (implements uk.ac.soton.itinnovation.freefluo.core.event.RunEventSource, uk.ac.soton.itinnovation.freefluo.core.task.Task, uk.ac.soton.itinnovation.freefluo.core.event.TaskStateListener)
    • uk.ac.soton.itinnovation.taverna.enactor.entities.PortTask
    • uk.ac.soton.itinnovation.taverna.enactor.entities.ProcessorTask (implements org.embl.ebi.escience.scufl.IProcessorTask)
  • org.embl.ebi.escience.treetable.AbstractTreeTableModel (implements org.embl.ebi.escience.treetable.TreeTableModel)
  • org.embl.ebi.escience.scuflui.AdvancedModelExplorerFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • org.embl.ebi.escience.scufl.AlternateProcessor (implements java.io.Serializable)
  • org.embl.ebi.escience.scufl.AnnotationTemplate
  • nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor.APEditor (implements org.embl.ebi.escience.scuflworkers.ProcessorEditor)
  • org.embl.ebi.escience.scuflworkers.apiconsumer.APIConsumerDefinition
  • org.embl.ebi.escience.scuflworkers.apiconsumer.APIConsumerEditor (implements org.embl.ebi.escience.scuflworkers.ProcessorEditor)
  • org.embl.ebi.escience.scuflworkers.apiconsumer.APIConsumerScavengerHelper (implements org.embl.ebi.escience.scuflworkers.ScavengerHelper)
  • org.embl.ebi.escience.scuflworkers.apiconsumer.APIConsumerTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.apiconsumer.APIConsumerXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • net.sf.taverna.x2008.xml.plugins.Application.Factory
  • net.sf.taverna.raven.appconfig.ApplicationConfig
  • net.sf.taverna.raven.appconfig.ApplicationRuntime
  • net.sf.taverna.raven.appconfig.ApplicationUserHome
  • nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor.APTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor.APXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • net.sf.taverna.x2008.xml.plugins.Artifact.Factory
  • net.sf.taverna.raven.repository.impl.ArtifactClassLoaderTest
  • net.sf.taverna.raven.repository.impl.ArtifactImplTest
  • net.sourceforge.taverna.scuflworkers.ui.AskWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
    • net.sourceforge.taverna.scuflworkers.ui.TellWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
    • net.sourceforge.taverna.scuflworkers.ui.WarnWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • junit.framework.Assert
    • junit.framework.TestCase (implements junit.framework.Test)
      • net.sf.taverna.raven.repository.BasicArtifactTest
      • org.biomoby.client.taverna.plugin.BiomobyProcessorTest
      • org.biomoby.client.taverna.plugin.BiomobyTaskTest
      • net.sourceforge.taverna.scuflworkers.biojava.BlastParserWorkerTest
      • net.sourceforge.taverna.scuflworkers.io.ConcatenateFileListWorkerTest
      • net.sourceforge.taverna.scuflworkers.io.DataRangeColumnTaskTest
      • net.sourceforge.taverna.scuflworkers.io.DataRangeTaskTest
      • net.sourceforge.taverna.scuflworkers.io.DelimitedFileReaderTest
      • org.embl.ebi.escience.scufl.view.DotViewTest
      • net.sourceforge.taverna.scuflworkers.biojava.EMBLParserWorkerTest
      • net.sourceforge.taverna.scuflworkers.io.EnvVariableWorkerTest
      • net.sourceforge.taverna.scuflworkers.io.ExcelFileReaderTest
      • org.embl.ebi.escience.scuflworkers.java.FailIfFalseTest
      • net.sourceforge.taverna.scuflworkers.biojava.FileFormatIDWorkerTest
      • net.sourceforge.taverna.scuflworkers.io.FileListByExtTaskTest
      • net.sourceforge.taverna.scuflworkers.io.FileListByRegexTaskTest
      • net.sourceforge.taverna.scuflworkers.io.FileUtilTest
      • net.sourceforge.taverna.scuflworkers.biojava.GenBankParserWorkerTest
      • net.sourceforge.taverna.scuflworkers.io.JTidyWorkerTest
      • net.sf.taverna.raven.spi.LatestVersionFilterTest
      • net.sourceforge.taverna.scuflworkers.io.LocalCommandTest
      • net.sourceforge.taverna.scuflworkers.LocalWorkerTest
      • org.embl.ebi.escience.scuflworkers.java.LocalWorkerTestCase
        • org.embl.ebi.escience.scuflworkers.java.ByteArrayToStringTest
        • org.embl.ebi.escience.scuflworkers.java.FailIfTrueTest
        • org.embl.ebi.escience.scuflworkers.java.FilterStringListTest
        • org.embl.ebi.escience.scuflworkers.java.FlattenListTest
        • org.embl.ebi.escience.scuflworkers.java.PadNumberTest
        • org.embl.ebi.escience.scuflworkers.java.SliceListTest
        • org.embl.ebi.escience.scuflworkers.java.StringConcatTest
        • org.embl.ebi.escience.scuflworkers.java.StringListMergeTest
        • org.embl.ebi.escience.scuflworkers.java.StringSetDifferenceTest
        • org.embl.ebi.escience.scuflworkers.java.StringSetIntersectionTest
        • org.embl.ebi.escience.scuflworkers.java.StringSetUnionTest
      • net.sf.taverna.utils.MyGridConfigurationTest
      • org.embl.ebi.escience.scufl.PortTest
      • net.sourceforge.taverna.scuflworkers.io.PostWorkerTest
      • org.embl.ebi.escience.scuflworkers.ProcessorHelperTest
      • net.sf.taverna.raven.spi.ProfileFactoryTest
      • net.sf.taverna.raven.spi.ProfileTest
      • net.sourceforge.taverna.scuflworkers.biojava.ReverseCompWorkerTest
      • org.embl.ebi.escience.scuflworkers.rserv.RservProcessorTest
      • org.embl.ebi.escience.scuflui.results.SaveAsExcelTest
      • org.embl.ebi.escience.scufl.ScuflModelTest
      • net.sourceforge.taverna.scuflworkers.jdbc.SQLQueryWorkerTest
      • net.sourceforge.taverna.scuflworkers.jdbc.SQLUpdateWorkerTest
      • net.sourceforge.taverna.scuflworkers.biojava.SwissProtParserWorkerTest
      • net.sf.taverna.zaria.TestBasePane
      • net.sf.taverna.update.plugin.TestPlugin
      • net.sf.taverna.update.plugin.TestPluginSite
      • net.sf.taverna.update.profile.TestProfileVersions
      • net.sourceforge.taverna.scuflworkers.io.TextFileReaderTest
      • net.sourceforge.taverna.scuflworkers.io.TextFileWriterTest
      • net.sourceforge.taverna.scuflworkers.biojava.TranscribeWorkerTest
      • net.sourceforge.taverna.scuflworkers.biojava.TranslateWorkerTest
      • org.embl.ebi.escience.baclava.UUIDLSIDProviderTest
      • net.sourceforge.taverna.scuflworkers.io.VelocityFileWriterTest
      • net.sf.taverna.raven.spi.VersionComparatorTest
      • net.sourceforge.taverna.scuflworkers.WorkflowTestCase
      • org.embl.ebi.escience.scufl.view.XScuflViewTest
  • org.embl.ebi.escience.baclava.lsid.AssigningServiceClient (implements org.embl.ebi.escience.baclava.LSIDProvider)
  • org.embl.ebi.escience.baclava.store.BaclavaDataServiceFactory
  • org.embl.ebi.escience.baclava.iterator.BaclavaIterator (implements org.embl.ebi.escience.baclava.iterator.ResumableIterator)
  • org.embl.ebi.escience.baclava.Base64
  • net.iharder.Base64
  • net.sf.taverna.raven.repository.BasicArtifact (implements net.sf.taverna.raven.repository.Artifact)
    • net.sf.taverna.raven.repository.impl.ArtifactImpl
  • org.jgraph.graph.BasicMarqueeHandler
    • org.embl.ebi.escience.scuflui.graph.MarqueeHandler
  • net.sf.taverna.t2.util.beanable.BeanableFactory<BeanableType,BeanType>
  • net.sf.taverna.t2.util.beanable.BeanableFactoryRegistry.CheckOnUpdateObserver (implements net.sf.taverna.t2.lang.observer.Observer<Message>)
  • net.sf.taverna.t2.util.beanable.jaxb.BeanSerialiser
  • net.sf.taverna.t2.util.beanable.jaxb.BeanSerialiser.RefreshBindingsObserver (implements net.sf.taverna.t2.lang.observer.Observer<Message>)
  • org.embl.ebi.escience.scuflworkers.beanshell.BeanshellEditor (implements org.embl.ebi.escience.scuflworkers.ProcessorEditor)
  • org.embl.ebi.escience.scuflworkers.beanshell.BeanshellTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.beanshell.BeanshellXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.embl.ebi.escience.scuflworkers.biomart.BiomartEditor (implements org.embl.ebi.escience.scuflworkers.ProcessorEditor)
  • org.embl.ebi.escience.scuflworkers.biomart.BiomartScavengerHelper (implements org.embl.ebi.escience.scuflworkers.ScavengerHelper)
  • org.embl.ebi.escience.scuflworkers.biomart.BiomartTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.biomart.BiomartXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.biomoby.client.taverna.plugin.test.BioMobyObjectProcessorTest
  • org.biomoby.client.taverna.plugin.BiomobyObjectScavengerHelper (implements org.embl.ebi.escience.scuflworkers.ScavengerHelper)
  • org.biomoby.client.taverna.plugin.BiomobyObjectTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.biomoby.client.taverna.plugin.BiomobyObjectTaskTest
  • org.biomoby.client.taverna.plugin.BiomobyObjectXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.biomoby.client.taverna.plugin.BiomobyParserProcessorTest
  • org.biomoby.client.taverna.plugin.test.BioMobyProcessorTest
  • org.biomoby.client.taverna.plugin.BiomobyScavengerAction (implements org.embl.ebi.escience.scuflui.workbench.scavenger.spi.ScavengerActionSPI)
  • org.biomoby.client.taverna.plugin.BiomobyScavengerHelper (implements org.embl.ebi.escience.scuflworkers.ScavengerHelper)
  • org.embl.ebi.escience.scuflworkers.biomoby.BiomobyScavengerHelper (implements org.embl.ebi.escience.scuflworkers.ScavengerHelper)
  • org.biomoby.client.taverna.plugin.BiomobyScavengerWorker
  • org.biomoby.client.taverna.plugin.BiomobyTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.biomoby.BiomobyTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.biomoby.client.taverna.plugin.BiomobyXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.embl.ebi.escience.scuflworkers.biomoby.BiomobyXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • net.sourceforge.taverna.scuflworkers.biojava.BlastParserWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sf.taverna.tools.Bootstrap
  • net.sf.taverna.raven.appconfig.bootstrap.Bootstrap
  • net.sf.taverna.tools.BootstrapTest
  • org.apache.bsf.BSFDeclaredBean
    • org.apache.bsf.ExtendedBSFDeclaredBean
  • net.sourceforge.taverna.scuflworkers.bsf.BSFEditor (implements org.embl.ebi.escience.scuflworkers.ProcessorEditor)
  • org.apache.bsf.BSFManager
    • org.apache.bsf.ExtendedBSFManager
  • net.sourceforge.taverna.scuflworkers.bsf.BSFTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • net.sourceforge.taverna.scuflworkers.bsf.BSFXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.embl.ebi.escience.scuflworkers.java.ByteArrayToString (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflui.shared.BytesSelection (implements java.awt.datatransfer.ClipboardOwner, java.awt.datatransfer.Transferable)
  • org.biomoby.client.taverna.plugin.CacheImpl
  • net.sourceforge.taverna.scuflworkers.ui.ChooseWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • java.lang.ClassLoader
    • net.sf.taverna.raven.repository.AggregatingClassLoader
    • java.security.SecureClassLoader
      • java.net.URLClassLoader
        • net.sf.taverna.tools.BootstrapClassLoader
        • net.sf.taverna.raven.prelauncher.BootstrapClassLoader
        • net.sf.taverna.raven.repository.impl.LocalArtifactClassLoader
  • net.sf.taverna.raven.prelauncher.ClassLocation
  • org.embl.ebi.escience.scuflui.renderers.CollectionAsTable (implements org.embl.ebi.escience.scuflui.spi.RendererSPI)
  • net.sf.taverna.x2008.xml.plugins.Compatibility.Factory
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • net.sf.taverna.zaria.progress.BlurredGlassPane
        • org.jgraph.graph.EdgeRenderer (implements org.jgraph.graph.CellViewRenderer, java.io.Serializable)
          • org.embl.ebi.escience.scuflui.graph.WorkflowEdgeRenderer
        • net.sf.taverna.zaria.progress.InfiniteProgressPanel (implements java.awt.event.MouseListener)
        • javax.swing.JFileChooser (implements javax.accessibility.Accessible)
          • org.embl.ebi.escience.scuflui.workbench.NestedFileChooser
        • org.jgraph.JGraph (implements javax.accessibility.Accessible, javax.swing.Scrollable, java.io.Serializable)
          • org.embl.ebi.escience.scuflui.graph.WorkflowEditor (implements org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • javax.swing.tree.DefaultTreeCellRenderer (implements javax.swing.tree.TreeCellRenderer)
            • org.biomoby.client.taverna.plugin.BioMobyObjectTreeCustomRenderer
            • org.biomoby.client.taverna.plugin.BioMobyServiceTreeCustomRenderer
            • org.embl.ebi.escience.baclava.factory.DataThingTreeNodeRenderer
            • org.embl.ebi.escience.scuflui.shared.NodeColouringRenderer
              • org.embl.ebi.escience.scuflui.shared.ScuflModelExplorerRenderer
                • org.embl.ebi.escience.scuflui.workbench.ScavengerTreeRenderer
          • net.sf.taverna.update.plugin.ui.UpdatesAvailableIcon (implements net.sf.taverna.update.plugin.event.PluginManagerListener)
          • net.sf.taverna.raven.plugins.ui.UpdatesAvailableIcon (implements net.sf.taverna.raven.plugins.event.PluginManagerListener)
        • javax.swing.JMenuBar (implements javax.accessibility.Accessible, javax.swing.MenuElement)
          • org.embl.ebi.escience.scuflui.workbench.Workbench.WorkbenchMenuBar
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • org.embl.ebi.escience.scuflui.AdvancedModelExplorer (implements org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
          • org.embl.ebi.escience.scuflui.AdvancedModelExplorer.WorkflowMetadata
          • nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor.APConfigPanel (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
          • org.embl.ebi.escience.scuflworkers.beanshell.BeanshellConfigPanel (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, org.embl.ebi.escience.scuflui.spi.UIComponentSPI)
          • org.embl.ebi.escience.scuflworkers.biomart.BiomartConfigPanel (implements org.embl.ebi.escience.scuflui.spi.UIComponentSPI)
          • org.biomoby.client.taverna.plugin.BiomobyScavengerActionDialog
          • org.biomoby.client.taverna.plugin.BiomobyScavengerDialog
          • net.sourceforge.taverna.scuflworkers.bsf.BSFConfigPanel (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
          • org.embl.ebi.escience.scuflworkers.dependency.DependenciesPanel
          • org.embl.ebi.escience.scuflworkers.dependency.DependenciesPanel.Artifacts
          • org.embl.ebi.escience.scuflworkers.dependency.DependenciesPanel.ClassloaderOptions (implements java.awt.event.ActionListener)
          • org.embl.ebi.escience.scuflworkers.dependency.DependenciesPanel.JarFiles
          • org.embl.ebi.escience.scuflui.EnactorInvocation (implements org.embl.ebi.escience.scuflui.spi.UIComponentSPI)
          • org.embl.ebi.escience.scuflui.facets.FacetsTable
          • org.embl.ebi.escience.scuflui.IterationStrategyEditorControl
          • org.jdesktop.swing.form.JForm
            • net.sourceforge.taverna.publish.RepositoryForm
          • org.biomoby.client.taverna.plugin.MobyPanel (implements org.embl.ebi.escience.scuflui.spi.UIComponentSPI)
          • net.sf.taverna.t2.partition.ui.PartitionAlgorithmListEditor
          • net.sf.taverna.update.plugin.ui.PluginListCellRenderer (implements javax.swing.ListCellRenderer)
          • net.sf.taverna.raven.plugins.ui.PluginListCellRenderer (implements javax.swing.ListCellRenderer)
          • org.embl.ebi.escience.scuflworkers.soaplab.PollingPropertiesEditor.PollingPropertiesPanel (implements org.embl.ebi.escience.scuflui.spi.UIComponentSPI)
          • net.sf.taverna.raven.profile.ui.ProfileVersionCellRenderer (implements javax.swing.ListCellRenderer)
          • net.sf.taverna.update.profile.ui.ProfileVersionCellRenderer (implements javax.swing.ListCellRenderer)
          • org.embl.ebi.escience.scuflui.facets.PropertySheet
          • org.embl.ebi.escience.scuflui.ResultItemPanel
          • org.embl.ebi.escience.scuflui.results.ResultTablePanel (implements org.embl.ebi.escience.scuflui.results.ResultTable.TableSelectionListener)
          • org.embl.ebi.escience.scuflworkers.rserv.RservConfigPanel (implements java.awt.event.FocusListener, org.embl.ebi.escience.scufl.ScuflModelEventListener, org.embl.ebi.escience.scuflui.spi.UIComponentSPI)
          • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellConfigPanel (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
          • org.embl.ebi.escience.scuflui.ScavengerTreePanel (implements org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
            • org.embl.ebi.escience.scuflui.BlankScavengerTreePanel
          • org.embl.ebi.escience.scuflui.ScuflDiagramPanel (implements org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
          • org.embl.ebi.escience.scuflui.ScuflSemanticMarkupEditor (implements org.embl.ebi.escience.scuflui.spi.SemanticMarkupViewSPI)
          • org.embl.ebi.escience.scuflui.shared.ShadedLabel
          • net.sf.taverna.t2.lang.ui.ShadedLabel
          • org.biomoby.client.taverna.plugin.SimpleActionFrame (implements org.embl.ebi.escience.scuflui.spi.UIComponentSPI)
          • org.embl.ebi.escience.scuflui.WorkflowInputMapBuilder (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
          • org.embl.ebi.escience.scuflui.WorkflowInputMapBuilder.PortDescription
          • org.embl.ebi.escience.scuflui.WorkflowInputPanel
          • org.embl.ebi.escience.scuflui.WorkflowInputPanel.DescriptionAndDiagram
          • org.embl.ebi.escience.scuflui.WorkflowInputPanel.Header
          • org.embl.ebi.escience.scuflui.WorkflowInputPanel.Input
          • org.embl.ebi.escience.scuflui.WorkflowInputPanel.Inputs
          • org.embl.ebi.escience.scuflui.WorkflowInputPanel.RunButtons
          • org.embl.ebi.escience.scuflui.WorkflowInstanceContainer (implements org.embl.ebi.escience.scuflui.spi.WorkflowInstanceSetViewSPI)
          • org.embl.ebi.escience.scuflui.WorkflowInstanceContainer.HelpPanel
        • javax.swing.JSplitPane (implements javax.accessibility.Accessible)
          • org.embl.ebi.escience.scuflui.WorkflowInputPanel.DiagramAndInputs
          • net.sf.taverna.zaria.ZSplitPane.DividerLocationSplitPane
        • javax.swing.JTable (implements javax.accessibility.Accessible, javax.swing.event.CellEditorListener, javax.swing.event.ListSelectionListener, javax.swing.Scrollable, javax.swing.event.TableColumnModelListener, javax.swing.event.TableModelListener)
          • org.embl.ebi.escience.treetable.JTreeTable
            • org.embl.ebi.escience.scuflui.treeview.ScuflModelTreeTable (implements java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener, java.awt.dnd.DropTargetListener, org.embl.ebi.escience.scufl.ScuflModelEventListener, org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
              • org.embl.ebi.escience.scuflui.ScuflModelTreeTableContrib
          • org.embl.ebi.escience.scuflui.results.ResultTable
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JTextArea
            • org.embl.ebi.escience.scuflui.DotTextArea (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
            • org.embl.ebi.escience.scuflui.EnactorEventMonitor (implements org.embl.ebi.escience.scuflui.spi.UIComponentSPI)
            • org.embl.ebi.escience.scuflui.XScuflTextArea (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
          • javax.swing.JTextField (implements javax.swing.SwingConstants)
            • org.embl.ebi.escience.treetable.JTreeTable.TreeTableTextField
        • javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • org.embl.ebi.escience.scuflui.shared.ExtendedJTree
            • org.embl.ebi.escience.scuflui.workbench.DefaultScavengerTree (implements org.embl.ebi.escience.scuflui.workbench.ScavengerTree, org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
          • org.embl.ebi.escience.scuflui.IterationStrategyEditor (implements java.awt.dnd.Autoscroll, java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener, org.embl.ebi.escience.scuflui.spi.ProcessorViewSPI, javax.swing.event.TreeModelListener)
          • org.embl.ebi.escience.treetable.JTreeTable.TreeTableCellRenderer (implements javax.swing.table.TableCellRenderer)
          • org.embl.ebi.escience.scuflui.treeview.ScuflModelExplorer (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
          • org.embl.ebi.escience.scuflui.shared.XMLTree
        • org.embl.ebi.escience.scuflui.ScuflSVGDiagram (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
        • org.embl.ebi.escience.scuflui.TemplateEditor (implements org.embl.ebi.escience.scuflui.spi.ProcessorViewSPI)
        • org.embl.ebi.escience.scuflui.XScuflTree (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI)
        • net.sf.taverna.zaria.ZPane (implements net.sf.taverna.zaria.ZTreeNode)
          • net.sf.taverna.zaria.ZBasePane
            • org.embl.ebi.escience.scuflui.workbench.WorkbenchZBasePane
          • net.sf.taverna.zaria.ZBlankComponent (implements net.sf.taverna.zaria.ZTreeNode)
          • net.sf.taverna.zaria.ZRavenComponent
          • net.sf.taverna.zaria.ZSplitPane
          • net.sf.taverna.zaria.ZTabbedPane
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.embl.ebi.escience.scuflui.workbench.AboutBox
            • net.sf.taverna.update.plugin.ui.AddPluginSiteFrame
            • net.sf.taverna.raven.plugins.ui.AddPluginSiteFrame
            • net.sf.taverna.zaria.raven.ArtifactDownloadDialog
            • org.embl.ebi.escience.scuflui.actions.PasswordInput
            • net.sf.taverna.update.plugin.ui.PluginManagerFrame
            • net.sf.taverna.raven.plugins.ui.PluginManagerFrame
            • net.sf.taverna.update.plugin.ui.PluginSiteFrame
            • net.sf.taverna.raven.plugins.ui.PluginSiteFrame
            • net.sf.taverna.raven.profile.ui.ProfileVersionListFrame
            • net.sf.taverna.update.profile.ui.ProfileVersionListFrame
            • net.sourceforge.taverna.publish.PublishDialog
            • net.sf.taverna.t2.lang.ui.ValidatingUserInputDialog
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.embl.ebi.escience.baclava.tools.DataThingViewer
            • net.sf.taverna.t2.partition.ui.UITest
            • org.embl.ebi.escience.scuflui.workbench.Workbench
        • javax.swing.JWindow (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
          • net.sf.taverna.raven.SplashScreen
  • javax.swing.plaf.ComponentUI
    • javax.swing.plaf.TableUI
      • javax.swing.plaf.basic.BasicTableUI
        • org.embl.ebi.escience.scuflui.results.ResultTableUI
  • net.sourceforge.taverna.scuflworkers.io.ConcatenateFileListWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scufl.ConcurrencyConstraint (implements java.io.Serializable)
  • net.sf.taverna.raven.log.ConsoleLog (implements net.sf.taverna.raven.log.LogInterface)
  • org.biomoby.client.taverna.plugin.CopyOfBiomobyTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.biomoby.client.taverna.plugin.CreateMobyCollection (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.biomoby.client.taverna.plugin.CreateMobyData (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.biomoby.CreateMobyData (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.biomoby.client.taverna.plugin.CreateMobySimple (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflui.shared.CTransferableTreePath (implements java.awt.datatransfer.Transferable)
  • net.sf.taverna.t2.lang.ui.CTransferableTreePath (implements java.awt.datatransfer.Transferable)
  • net.sf.taverna.t2.partition.algorithms.CustomPartitionAlgorithm (implements net.sf.taverna.t2.partition.PartitionAlgorithm<ValueType>)
  • net.sf.taverna.perspectives.CustomPerspective (implements net.sf.taverna.perspectives.PerspectiveSPI)
  • net.sf.taverna.perspectives.CustomPerspectiveFactory
  • org.embl.ebi.escience.scufl.DataConstraint (implements java.lang.Comparable<T>, java.io.Serializable)
  • net.sourceforge.taverna.scuflworkers.io.DataRangeTask (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
    • net.sourceforge.taverna.scuflworkers.io.DataRangeColumnTask (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.baclava.DataThing (implements java.lang.Cloneable, java.io.Serializable)
  • net.sourceforge.taverna.baclava.DataThingAdapter
  • org.embl.ebi.escience.baclava.factory.DataThingFactory
  • org.embl.ebi.escience.baclava.factory.DataThingFactoryTest
  • org.embl.ebi.escience.baclava.factory.DataThingTreeFactory
  • org.embl.ebi.escience.baclava.factory.DataThingTreeTransferHandler (implements java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener)
  • org.embl.ebi.escience.baclava.factory.DataThingXMLFactory
  • org.embl.ebi.escience.scuflworkers.java.DecodeBase64 (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • javax.swing.DefaultButtonModel (implements javax.swing.ButtonModel, java.io.Serializable)
    • javax.swing.JToggleButton.ToggleButtonModel
      • org.embl.ebi.escience.scuflui.actions.OfflineToggleModel (implements org.embl.ebi.escience.scufl.ScuflModelEventListener)
      • org.embl.ebi.escience.scuflui.graph.WorkflowEditor.ShowBoringModel
  • org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
    • net.sourceforge.taverna.biojava.StringXMLEmitter
  • javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
    • org.embl.ebi.escience.baclava.iterator.BaclavaIteratorNode (implements org.embl.ebi.escience.baclava.iterator.ResumableIterator)
    • org.embl.ebi.escience.scufl.CrossNode
    • org.embl.ebi.escience.baclava.factory.DataThingTreeNode
    • org.embl.ebi.escience.scufl.DotNode
    • org.embl.ebi.escience.baclava.iterator.JoinIteratorNode (implements org.embl.ebi.escience.baclava.iterator.ResumableIterator)
    • org.embl.ebi.escience.scufl.LeafNode
    • org.embl.ebi.escience.baclava.iterator.LockStepIteratorNode (implements org.embl.ebi.escience.baclava.iterator.ResumableIterator)
    • org.embl.ebi.escience.scuflui.workbench.Scavenger
      • org.embl.ebi.escience.scuflworkers.apiconsumer.APIConsumerScavenger
      • nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor.APScavenger
      • org.embl.ebi.escience.scuflworkers.beanshell.BeanshellScavenger
      • org.biomoby.client.taverna.plugin.BiomobyObjectScavenger
      • org.biomoby.client.taverna.plugin.BiomobyScavenger
      • org.embl.ebi.escience.scuflworkers.biomoby.BiomobyScavenger
      • net.sourceforge.taverna.scuflworkers.bsf.BSFScavenger
      • org.embl.ebi.escience.scuflui.workbench.FileScavenger
      • org.embl.ebi.escience.scuflworkers.inferno.InfernoScavenger
      • org.embl.ebi.escience.scuflworkers.java.LocalServiceScavenger
      • org.biomoby.client.taverna.plugin.MobyParseDatatypeScavenger
      • org.embl.ebi.escience.scuflworkers.notification.NotificationScavenger
      • org.embl.ebi.escience.scuflworkers.rdfgenerator.RDFGeneratorScavenger
      • org.embl.ebi.escience.scuflworkers.rserv.RservScavenger
      • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellScavenger
      • org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavenger
      • org.embl.ebi.escience.scuflworkers.stringconstant.StringConstantScavenger
      • org.embl.ebi.escience.scuflworkers.talisman.TalismanScavenger
      • org.embl.ebi.escience.scuflui.workbench.URLBasedScavenger
        • org.embl.ebi.escience.scuflworkers.biomart.BiomartScavenger
        • org.embl.ebi.escience.scuflworkers.workflow.WorkflowScavenger
        • org.embl.ebi.escience.scuflworkers.wsdl.WSDLBasedScavenger
      • org.embl.ebi.escience.scuflworkers.web.WebScavenger
  • javax.swing.tree.DefaultTreeModel (implements java.io.Serializable, javax.swing.tree.TreeModel)
    • org.embl.ebi.escience.scufl.view.TreeModelView (implements org.embl.ebi.escience.scufl.ScuflModelEventListener)
      • org.embl.ebi.escience.scufl.view.TreeTableModelView (implements org.embl.ebi.escience.treetable.TreeTableModel)
  • net.sourceforge.taverna.scuflworkers.io.DelimitedFileReader (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.dependency.DependenciesPanel.FileExtFilter (implements java.io.FilenameFilter)
  • net.sf.taverna.x2008.xml.plugins.Dependency.Factory
  • org.embl.ebi.escience.scuflworkers.dependency.DependencyXMLHandler
  • net.sf.taverna.x2008.xml.plugins.DescribedPlugin.Factory
  • org.embl.ebi.escience.scuflui.DotTextAreaFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • org.embl.ebi.escience.scufl.view.DotView (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, java.io.Serializable)
  • org.embl.ebi.escience.scufl.view.DotViewSettings
  • net.sf.taverna.raven.repository.impl.DownloadStatusImpl (implements net.sf.taverna.raven.repository.DownloadStatus)
  • net.sf.taverna.raven.repository.impl.DummyRepository (implements net.sf.taverna.raven.repository.Repository)
    • net.sf.taverna.raven.repository.impl.EclipseRepository
  • org.embl.ebi.escience.scuflworkers.java.EchoList (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.biojava.EMBLParserWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.java.EmitLotsOfStrings (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflui.EnactorEventMonitorFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • org.embl.ebi.escience.scuflworkers.java.EncodeBase64 (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.io.EnvVariableWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • java.util.EventObject (implements java.io.Serializable)
    • org.embl.ebi.escience.scuflui.facets.FTableColumnModelEvent
    • net.sf.taverna.update.plugin.event.PluginEvent
    • net.sf.taverna.raven.plugins.event.PluginEvent
    • net.sf.taverna.update.plugin.event.PluginManagerEvent
    • net.sf.taverna.raven.plugins.event.PluginManagerEvent
  • net.sourceforge.taverna.scuflworkers.io.ExcelFileReader (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.java.ExtractImageLinks (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.biomoby.client.taverna.plugin.ExtractMobyData (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.biomoby.ExtractMobyData (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.java.FailIfTrue (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
    • org.embl.ebi.escience.scuflworkers.java.FailIfFalse (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.biojava.FastaWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflui.workbench.FileDrop
  • javax.swing.filechooser.FileFilter
    • org.embl.ebi.escience.scuflui.shared.ExtensionFileFilter
    • net.sf.taverna.t2.lang.ui.ExtensionFileFilter
    • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellFileFilter
  • net.sourceforge.taverna.scuflworkers.biojava.FileFormatIDWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.io.FileListByExtTask (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.io.FileListByRegexTask (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.io.FileNameUtil
  • net.sourceforge.taverna.scuflworkers.ncbi.FileStreamProcessor (implements net.sourceforge.taverna.io.StreamProcessor)
  • org.embl.ebi.escience.scuflworkers.java.FilterStringList (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sf.taverna.t2.spi.FirstDummySPI (implements net.sf.taverna.t2.spi.DummySPI)
  • org.embl.ebi.escience.scuflworkers.java.FlattenList (implements org.embl.ebi.escience.scuflworkers.java.LocalWorkerWithPorts, org.embl.ebi.escience.scuflworkers.java.XMLExtensible)
  • org.embl.ebi.escience.baclava.factory.Flavours
  • org.embl.ebi.escience.scufl.enactor.implementation.FreefluoEnactorProxy (implements org.embl.ebi.escience.scufl.enactor.EnactorProxy)
  • org.embl.ebi.escience.scuflui.facets.FTableColumn
  • org.embl.ebi.escience.scuflui.facets.FTableColumnModel
  • net.sourceforge.taverna.scuflworkers.biojava.GenBankParserWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.java.GetLSID (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflui.shared.GraphColours
  • org.embl.ebi.escience.scuflui.graph.GraphSpanningTree
    • org.embl.ebi.escience.scuflui.graph.ModelSpanningTree
      • org.embl.ebi.escience.scuflui.graph.PositionLayout
      • org.embl.ebi.escience.scuflui.graph.RowLayout
  • org.embl.ebi.escience.scuflui.graph.GraphUtilities
  • net.sf.taverna.raven.helloworld.HelloWorld (implements net.sf.taverna.raven.launcher.Launchable)
  • org.biomoby.client.taverna.plugin.Household
  • net.sf.taverna.t2.lang.ui.icons.Icons
  • net.sf.taverna.x2008.xml.plugins.IdentifiedPlugin.Factory
  • java.awt.Image
    • java.awt.image.BufferedImage (implements java.awt.Transparency, java.awt.image.WritableRenderedImage)
      • org.embl.ebi.escience.scuflui.shared.CArrowImage
      • net.sf.taverna.t2.lang.ui.CArrowImage
  • com.jhlabs.image.ImageMath
  • net.sourceforge.taverna.scuflworkers.io.ImageReader (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.io.ImageWriter (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.inferno.InfernoScavengerHelper (implements org.embl.ebi.escience.scuflworkers.ScavengerHelper)
  • org.embl.ebi.escience.scuflworkers.inferno.InfernoTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.inferno.InfernoXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • java.io.InputStream (implements java.io.Closeable)
    • java.io.FilterInputStream
      • org.embl.ebi.escience.baclava.Base64.InputStream
      • net.iharder.Base64.InputStream
  • net.sf.taverna.raven.spi.InstanceRegistry<IType> (implements java.lang.Iterable<T>, net.sf.taverna.raven.spi.RegistryListener)
  • org.embl.ebi.escience.scufl.IterationStrategy
  • org.embl.ebi.escience.scuflui.IterationStrategyEditorFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • org.embl.ebi.escience.baclava.iterator.IteratorNodeTests
  • org.embl.ebi.escience.baclava.iterator.IteratorTest
  • net.sf.taverna.raven.log.JavaLog (implements net.sf.taverna.raven.log.LogInterface)
  • org.embl.ebi.escience.baclava.store.JDBCBaclavaDataService (implements org.embl.ebi.escience.baclava.store.BaclavaDataService, org.embl.ebi.escience.baclava.LSIDProvider)
  • org.embl.ebi.escience.baclava.store.test.JDBCStoreTest
  • org.embl.ebi.escience.baclava.iterator.JoinIterator (implements org.embl.ebi.escience.baclava.iterator.ResumableIterator)
  • net.sourceforge.taverna.scuflworkers.io.JTidyWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflui.renderers.LabelRenderer (implements org.embl.ebi.escience.scuflui.spi.RendererSPI)
  • org.embl.ebi.escience.scufl.tools.Lang
  • net.sf.taverna.raven.launcher.Launcher
  • net.sf.taverna.raven.launcher.LauncherHttpProxyConfiguration
  • org.embl.ebi.escience.scuflui.graph.LayoutConstants
  • org.embl.ebi.escience.scufl.shared.LinkingMenus
  • net.sf.taverna.t2.partition.algorithms.LiteralValuePartitionAlgorithm (implements net.sf.taverna.t2.partition.PartitionAlgorithm<ValueType>)
  • net.sf.taverna.t2.partition.algorithms.LiteralValuePartitionAlgorithmTest
  • net.sf.taverna.raven.Loader
  • net.sf.taverna.raven.LoaderTest
  • net.sourceforge.taverna.scuflworkers.io.LocalCommand (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sf.taverna.raven.repository.impl.LocalRepository (implements net.sf.taverna.raven.repository.Repository)
  • net.sf.taverna.raven.repository.impl.LocalRepositoryTest
  • org.embl.ebi.escience.scuflworkers.java.LocalServiceTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.java.LocalServiceXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.embl.ebi.escience.baclava.iterator.LockStepIterator (implements org.embl.ebi.escience.baclava.iterator.ResumableIterator)
  • net.sf.taverna.raven.log.Log
  • net.sf.taverna.raven.log.Log4jLog (implements net.sf.taverna.raven.log.LogInterface)
  • org.embl.ebi.escience.baclava.LSIDProvider.NamespaceEnumeration
  • net.sf.taverna.t2.spi.MissingConstructor (implements net.sf.taverna.t2.spi.DummySPI)
  • org.biomoby.client.taverna.plugin.MobyObjectTreeNode
  • org.biomoby.client.taverna.plugin.MobyParseDatatypeTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.biomoby.client.taverna.plugin.MobyParseDatatypeXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.biomoby.client.taverna.plugin.MobyServiceTreeNode
  • org.embl.ebi.escience.scuflui.shared.ModelMap
  • net.sf.taverna.t2.lang.ui.ModelMap (implements net.sf.taverna.t2.lang.observer.Observable<Message>)
  • net.sf.taverna.t2.lang.ui.ModelMap.ModelMapEvent
    • net.sf.taverna.t2.lang.ui.ModelMap.ModelChangedEvent
    • net.sf.taverna.t2.lang.ui.ModelMap.ModelCreatedEvent
    • net.sf.taverna.t2.lang.ui.ModelMap.ModelDestroyedEvent
  • java.awt.event.MouseAdapter (implements java.awt.event.MouseListener)
    • org.embl.ebi.escience.scuflui.workbench.ScavengerTreePopupHandler
    • org.embl.ebi.escience.scuflui.treeview.ScuflModelExplorerPopupHandler
  • javax.swing.event.MouseInputAdapter (implements javax.swing.event.MouseInputListener)
    • org.biomoby.client.taverna.plugin.OverlayListener
  • java.awt.event.MouseMotionAdapter (implements java.awt.event.MouseMotionListener)
    • org.embl.ebi.escience.scuflui.treeview.ScuflModelExplorerDragHandler
  • net.sf.taverna.t2.lang.observer.MultiCaster<Message> (implements net.sf.taverna.t2.lang.observer.Observable<Message>)
  • org.embl.ebi.escience.scuflui.workbench.NestedWorkflowSwitcher
  • net.sf.taverna.raven.util.NodeListIterable (implements java.lang.Iterable<T>)
  • org.embl.ebi.escience.scuflworkers.notification.NotificationProcessorTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.notification.NotificationXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • net.sf.taverna.t2.spi.NotListedDummySPI (implements net.sf.taverna.t2.spi.DummySPI)
  • net.sf.taverna.t2.lang.observer.ObserverTest
  • net.sf.taverna.t2.lang.observer.ObserverTest.MyObservable (implements net.sf.taverna.t2.lang.observer.Observable<Message>)
  • net.sf.taverna.t2.lang.observer.ObserverTest.MyObserver (implements net.sf.taverna.t2.lang.observer.Observer<Message>)
  • net.sf.taverna.t2.lang.observer.ObserverTest.SelvRemovingObserver (implements net.sf.taverna.t2.lang.observer.Observer<Message>)
  • java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
    • java.io.FilterOutputStream
      • org.embl.ebi.escience.baclava.Base64.OutputStream
      • net.iharder.Base64.OutputStream
  • org.embl.ebi.escience.scuflworkers.java.PadNumber (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.biomoby.client.taverna.plugin.ParseMobyXML
  • net.sf.taverna.t2.partition.Partition<ItemType,PartitionValueType,ChildPartitionValueType>
    • net.sf.taverna.t2.partition.RootPartition<ItemType> (implements javax.swing.tree.TreeModel)
  • net.sf.taverna.t2.partition.PartitionTestApplication
  • net.sf.taverna.raven.plugins.Plugin (implements java.lang.Comparable<T>)
  • net.sf.taverna.update.plugin.Plugin (implements java.lang.Comparable<T>)
  • net.sf.taverna.raven.plugins.Plugin.PluginId
  • net.sf.taverna.x2008.xml.plugins.PluginDocument.Factory
  • net.sf.taverna.raven.plugins.PluginManager (implements net.sf.taverna.raven.plugins.event.PluginListener)
  • net.sf.taverna.update.plugin.PluginManager (implements net.sf.taverna.update.plugin.event.PluginListener)
  • net.sf.taverna.update.plugin.ui.PluginRepositoryListener (implements net.sf.taverna.raven.repository.RepositoryListener)
  • net.sf.taverna.raven.plugins.ui.PluginRepositoryListener (implements net.sf.taverna.raven.repository.RepositoryListener)
  • net.sf.taverna.x2008.xml.plugins.Plugins.Factory
  • net.sf.taverna.x2008.xml.plugins.PluginsDocument.Factory
  • net.sf.taverna.raven.plugins.PluginSite
    • net.sf.taverna.raven.plugins.TavernaPluginSite
  • net.sf.taverna.update.plugin.PluginSite
    • net.sf.taverna.update.plugin.TavernaPluginSite
  • org.embl.ebi.escience.scuflworkers.soaplab.PollingPropertiesEditor (implements org.embl.ebi.escience.scuflworkers.ProcessorEditor)
  • net.sf.taverna.raven.repository.impl.PomPropertiesTest
  • org.embl.ebi.escience.scufl.Port (implements java.io.Serializable)
    • org.embl.ebi.escience.scufl.InputPort (implements java.io.Serializable, java.awt.datatransfer.Transferable)
      • org.embl.ebi.escience.scuflworkers.rserv.RservInputPort
      • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellInputPort
      • org.embl.ebi.escience.scuflworkers.java.XMLSplittableInputPort (implements org.embl.ebi.escience.scuflworkers.ScuflContextMenuAware)
    • org.embl.ebi.escience.scufl.OutputPort (implements java.io.Serializable, java.awt.datatransfer.Transferable)
      • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellOutputPort
      • org.embl.ebi.escience.scuflworkers.java.XMLSplittableOutputPort (implements org.embl.ebi.escience.scuflworkers.ScuflContextMenuAware)
  • net.sourceforge.taverna.scuflworkers.io.PostWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sf.taverna.raven.prelauncher.PreLauncher
  • net.sf.taverna.raven.prelauncher.PreLauncher.JarFilenameFilter (implements java.io.FilenameFilter)
  • org.embl.ebi.escience.scufl.provenance.process.ProcessEvent
    • org.embl.ebi.escience.scufl.provenance.process.ConstructingIterator
    • org.embl.ebi.escience.scufl.provenance.process.DataMismatchError
    • org.embl.ebi.escience.scufl.provenance.process.Invoking
      • org.embl.ebi.escience.scufl.provenance.process.InvokingWithIteration
    • org.embl.ebi.escience.scufl.provenance.process.ProcessCancelled
    • org.embl.ebi.escience.scufl.provenance.process.ProcessComplete
    • org.embl.ebi.escience.scufl.provenance.process.ProcessPaused
    • org.embl.ebi.escience.scufl.provenance.process.ProcessScheduled
      • org.embl.ebi.escience.scufl.provenance.process.AlternateProcessScheduled
    • org.embl.ebi.escience.scufl.provenance.process.ServiceError
    • org.embl.ebi.escience.scufl.provenance.process.ServiceFailure
    • org.embl.ebi.escience.scufl.provenance.process.TimeoutExceeded
    • org.embl.ebi.escience.scufl.provenance.process.WaitingToRetry
  • org.embl.ebi.escience.scufl.Processor (implements org.embl.ebi.escience.scufl.IProcessor, java.io.Serializable)
    • nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor.APProcessor
    • org.embl.ebi.escience.scuflworkers.biomart.BiomartProcessor (implements org.embl.ebi.escience.scuflworkers.HTMLSummarisableProcessor)
    • org.biomoby.client.taverna.plugin.BiomobyObjectProcessor (implements java.io.Serializable)
    • org.biomoby.client.taverna.plugin.BiomobyProcessor (implements org.embl.ebi.escience.scuflworkers.HTMLSummarisableProcessor, java.io.Serializable)
    • org.embl.ebi.escience.scuflworkers.biomoby.BiomobyProcessor (implements org.embl.ebi.escience.scuflworkers.HTMLSummarisableProcessor, java.io.Serializable)
    • net.sourceforge.taverna.scuflworkers.bsf.BSFProcessor (implements java.io.Serializable)
    • org.embl.ebi.escience.scuflworkers.dependency.DependencyProcessor
      • org.embl.ebi.escience.scuflworkers.apiconsumer.APIConsumerProcessor
      • org.embl.ebi.escience.scuflworkers.beanshell.BeanshellProcessor (implements java.io.Serializable)
    • org.embl.ebi.escience.scuflworkers.inferno.InfernoProcessor
    • org.embl.ebi.escience.scufl.InternalSinkPortHolder
    • org.embl.ebi.escience.scufl.InternalSourcePortHolder
    • org.embl.ebi.escience.scuflworkers.java.LocalServiceProcessor
    • org.biomoby.client.taverna.plugin.MobyParseDatatypeProcessor (implements java.io.Serializable)
    • org.embl.ebi.escience.scuflworkers.notification.NotificationProcessor
    • org.embl.ebi.escience.scuflworkers.rdfgenerator.RDFGeneratorProcessor (implements java.io.Serializable)
    • org.embl.ebi.escience.scuflworkers.rserv.RservProcessor (implements java.io.Serializable)
    • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellProcessor (implements java.io.Serializable)
    • org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor (implements org.embl.ebi.escience.scuflworkers.HTMLSummarisableProcessor, java.io.Serializable)
    • org.embl.ebi.escience.scuflworkers.stringconstant.StringConstantProcessor (implements java.io.Serializable)
    • org.embl.ebi.escience.scuflworkers.talisman.TalismanProcessor (implements java.io.Serializable)
    • org.embl.ebi.escience.scuflworkers.workflow.WorkflowProcessor (implements org.embl.ebi.escience.scufl.ScuflWorkflowProcessor, java.io.Serializable)
    • org.embl.ebi.escience.scuflworkers.wsdl.WSDLBasedProcessor (implements org.embl.ebi.escience.scuflworkers.HTMLSummarisableProcessor, java.io.Serializable)
  • org.embl.ebi.escience.scuflworkers.ProcessorFactory
    • org.embl.ebi.escience.scuflworkers.apiconsumer.APIConsumerProcessorFactory
    • nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor.APProcessorFactory
    • org.embl.ebi.escience.scuflworkers.beanshell.BeanshellProcessorFactory
    • org.embl.ebi.escience.scuflworkers.biomart.BiomartProcessorFactory
    • org.biomoby.client.taverna.plugin.BiomobyObjectProcessorFactory
    • org.biomoby.client.taverna.plugin.BiomobyProcessorFactory
    • org.embl.ebi.escience.scuflworkers.biomoby.BiomobyProcessorFactory
    • net.sourceforge.taverna.scuflworkers.bsf.BSFProcessorFactory
    • org.embl.ebi.escience.scuflworkers.inferno.InfernoProcessorFactory
    • org.embl.ebi.escience.scuflworkers.java.LocalServiceProcessorFactory
    • org.biomoby.client.taverna.plugin.MobyParseDatatypeProcessorFactory
    • org.embl.ebi.escience.scuflworkers.notification.NotificationProcessorFactory
    • org.embl.ebi.escience.scuflworkers.rdfgenerator.RDFGeneratorProcessorFactory
    • org.embl.ebi.escience.scuflworkers.rserv.RservProcessorFactory
    • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellProcessorFactory
    • org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
    • org.embl.ebi.escience.scuflworkers.stringconstant.StringConstantProcessorFactory
    • org.embl.ebi.escience.scuflworkers.talisman.TalismanProcessorFactory
    • org.embl.ebi.escience.scuflworkers.workflow.WorkflowProcessorFactory (implements org.embl.ebi.escience.scufl.ScuflWorkflowProcessorFactory)
    • org.embl.ebi.escience.scuflworkers.wsdl.WSDLBasedProcessorFactory
  • org.embl.ebi.escience.scuflworkers.ProcessorHelper
  • org.embl.ebi.escience.scuflworkers.ProcessorInfoBeanHelper (implements org.embl.ebi.escience.scuflworkers.ProcessorInfoBean)
    • org.embl.ebi.escience.scuflworkers.apiconsumer.APIConsumerProcessorInfoBean
    • nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor.APProcessorInfoBean
    • org.embl.ebi.escience.scuflworkers.beanshell.BeanshellProcessorInfoBean
    • org.embl.ebi.escience.scuflworkers.biomart.BiomartProcessorInfoBean
    • org.biomoby.client.taverna.plugin.BiomobyObjectProcessorInfoBean
    • org.biomoby.client.taverna.plugin.BiomobyProcessorInfoBean
    • net.sourceforge.taverna.scuflworkers.bsf.BSFProcessorInfoBean
    • org.embl.ebi.escience.scuflworkers.inferno.InfernoProcessorInfoBean
    • org.embl.ebi.escience.scuflworkers.java.LocalServiceProcessorInfoBean
    • org.biomoby.client.taverna.plugin.MobyParseDatatypeProcessorInfoBean
    • org.embl.ebi.escience.scuflworkers.notification.NotificationProcessorInfoBean
    • org.embl.ebi.escience.scuflworkers.rdfgenerator.RDFGeneratorProcessorInfoBean
    • org.embl.ebi.escience.scuflworkers.rserv.RservProcessorInfoBean
    • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellProcessorInfoBean
    • org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorInfoBean
    • org.embl.ebi.escience.scuflworkers.stringconstant.StringConstantProcessorInfoBean
    • org.embl.ebi.escience.scuflworkers.talisman.TalismanProcessorInfoBean
    • org.embl.ebi.escience.scuflworkers.workflow.WorkflowProcessorInfoBean
    • org.embl.ebi.escience.scuflworkers.wsdl.WSDLProcessorInfoBean
  • net.sf.taverna.x2008.xml.plugins.Profile.Factory
  • net.sf.taverna.raven.spi.ProfileFactory
  • net.sf.taverna.raven.profile.ProfileHandler
  • net.sf.taverna.update.profile.ProfileHandler
  • net.sf.taverna.tools.ProfileListSelector
  • net.sf.taverna.raven.appconfig.bootstrap.ProfileListSelector
  • net.sf.taverna.tools.ProfileSelector
  • net.sf.taverna.raven.appconfig.bootstrap.ProfileSelector
  • net.sf.taverna.raven.profile.ProfileUpdateHandler
  • net.sf.taverna.update.profile.ProfileUpdateHandler
  • net.sf.taverna.raven.profile.ProfileVersion
  • net.sf.taverna.update.profile.ProfileVersion
  • net.sf.taverna.raven.profile.ProfileVersions
  • net.sf.taverna.update.profile.ProfileVersions
  • java.beans.PropertyEditorSupport (implements java.beans.PropertyEditor)
    • org.embl.ebi.escience.scuflui.facets.PropertySheet.Editor
  • org.embl.ebi.escience.scuflui.facets.PropertyFetcher (implements org.embl.ebi.escience.scuflui.spi.FacetFinderSPI)
  • org.embl.ebi.escience.scuflui.facets.PropertyFetcher.Closure (implements org.embl.ebi.escience.scuflui.spi.FacetFinderSPI.ColumnID)
  • net.sf.taverna.raven.Raven
  • org.rosuda.JRclient.Rconnection
    • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellConnection
  • org.embl.ebi.escience.scuflworkers.rdfgenerator.RDFGeneratorScavengerHelper (implements org.embl.ebi.escience.scuflworkers.ScavengerHelper)
  • org.embl.ebi.escience.scuflworkers.rdfgenerator.RDFGeneratorTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.rdfgenerator.RDFGeneratorXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.embl.ebi.escience.scufl.semantics.RDFSClassHolder
  • org.embl.ebi.escience.scufl.semantics.RDFSParser
  • org.embl.ebi.escience.scuflworkers.java.ReadFilesFromDirectory (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • java.awt.geom.RectangularShape (implements java.lang.Cloneable, java.awt.Shape)
    • java.awt.geom.Rectangle2D
      • org.embl.ebi.escience.scuflui.graph.BoundingBox
  • net.sourceforge.taverna.publish.RegexFileSelector (implements org.apache.commons.vfs.FileSelector)
  • net.sourceforge.taverna.scuflworkers.io.RegexFileWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflui.facets.RegexScanner (implements org.embl.ebi.escience.scuflui.spi.FacetFinderSPI)
  • org.embl.ebi.escience.scuflui.facets.RegexScanner.PatternEditor (implements java.beans.PropertyEditor)
  • org.embl.ebi.escience.scuflui.facets.RegexScanner.Scanner (implements org.embl.ebi.escience.scuflui.spi.FacetFinderSPI.ColumnID)
  • org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.baclava.store.RemoteSOAPStore (implements org.embl.ebi.escience.baclava.store.BaclavaDataService, org.embl.ebi.escience.baclava.LSIDProvider)
  • net.sourceforge.taverna.scuflworkers.ncbi.ReplacementStreamProcessor (implements net.sourceforge.taverna.io.StreamProcessor)
    • net.sourceforge.taverna.scuflworkers.ncbi.NCBIXMLStreamProcessor (implements net.sourceforge.taverna.io.StreamProcessor)
      • net.sourceforge.taverna.scuflworkers.ncbi.NCBIXSLTStreamProcessor
  • net.sf.taverna.tools.Repositories
  • net.sf.taverna.raven.appconfig.bootstrap.Repositories
  • net.sf.taverna.x2008.xml.plugins.Repositories.Factory
  • net.sf.taverna.tools.RepositoriesTest
  • net.sourceforge.taverna.publish.RepositoryManager
  • org.embl.ebi.escience.scuflui.results.ResultSource
  • org.embl.ebi.escience.scuflui.results.ResultTableCell
  • org.embl.ebi.escience.scuflui.results.ResultTableCellCollection
    • org.embl.ebi.escience.scuflui.results.ResultTableColumn
  • org.embl.ebi.escience.scuflui.results.ResultTableModel (implements javax.swing.table.TableModel)
  • org.embl.ebi.escience.scuflui.results.ResultThing
  • net.sourceforge.taverna.scuflworkers.biojava.ReverseCompWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.image.RotateImageWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.rserv.RservEditor (implements org.embl.ebi.escience.scuflworkers.ProcessorEditor)
  • org.embl.ebi.escience.scuflworkers.rserv.RservTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.rserv.RservXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellConnectionSettings (implements java.io.Serializable)
  • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellEditor (implements org.embl.ebi.escience.scuflworkers.ProcessorEditor)
  • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellPortTypes
  • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.embl.ebi.escience.scuflui.results.SaveAsDataThingDocument (implements org.embl.ebi.escience.scuflui.spi.ResultMapSaveSPI)
  • org.embl.ebi.escience.scuflui.results.SaveAsExcel (implements org.embl.ebi.escience.scuflui.spi.ResultMapSaveSPI)
  • org.embl.ebi.escience.scuflui.results.SaveToFileSystem (implements org.embl.ebi.escience.scuflui.spi.ResultMapSaveSPI)
  • org.embl.ebi.escience.scuflui.results.SaveToFileSystemMappingLSIDs (implements org.embl.ebi.escience.scuflui.spi.ResultMapSaveSPI)
  • net.sourceforge.taverna.scuflworkers.image.ScaleImageWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflui.workbench.ScavengerHelperThreadPool
  • net.sf.taverna.tools.Scavengers
  • org.embl.ebi.escience.scuflui.ScavengerTreePanelFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • org.embl.ebi.escience.scufl.shared.ScuflContextMenuFactory
  • org.embl.ebi.escience.scuflui.ScuflDiagramPanelFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • org.embl.ebi.escience.scuflui.graph.model.ScuflGraphAttributeChange (implements org.jgraph.event.GraphModelEvent.GraphModelChange)
  • org.embl.ebi.escience.scuflui.graph.model.ScuflGraphModel (implements org.jgraph.graph.GraphModel, org.jgraph.event.GraphModelListener)
  • org.embl.ebi.escience.scuflui.graph.model.ScuflGraphModelChange (implements org.jgraph.event.GraphModelEvent.GraphModelChange)
  • org.embl.ebi.escience.scufl.ScuflModel (implements java.io.Serializable)
  • org.embl.ebi.escience.scufl.ScuflModelEvent
    • org.embl.ebi.escience.scufl.MinorScuflModelEvent
    • org.embl.ebi.escience.scufl.ScuflModelAddEvent
    • org.embl.ebi.escience.scufl.ScuflModelRemoveEvent
    • org.embl.ebi.escience.scufl.ScuflModelRenameEvent
  • org.embl.ebi.escience.scufl.ScuflModelEventPrinter (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, java.io.Serializable)
  • org.embl.ebi.escience.scuflui.graph.model.ScuflModelReconciler (implements org.embl.ebi.escience.scufl.ScuflModelEventListener)
  • org.embl.ebi.escience.scuflui.shared.ScuflModelSet
  • org.embl.ebi.escience.scuflui.ScuflSVGDiagramFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • net.sf.taverna.t2.spi.SecondDummySPI (implements net.sf.taverna.t2.spi.DummySPI)
  • net.sourceforge.taverna.scuflworkers.ui.SelectFileWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.ui.SelectWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflui.facets.Self (implements org.embl.ebi.escience.scuflui.spi.FacetFinderSPI)
  • org.embl.ebi.escience.scufl.SemanticMarkup (implements java.io.Serializable)
    • org.embl.ebi.escience.scufl.PortSemanticMarkup
  • org.embl.ebi.escience.scuflworkers.java.SendEmail (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflui.actions.SetBoringAction (implements org.embl.ebi.escience.scuflui.spi.ProcessorActionSPI)
    • org.embl.ebi.escience.scuflui.actions.UnsetBoringAction
  • org.embl.ebi.escience.utils.SimpleFile
  • org.embl.ebi.escience.scufl.enactor.implementation.SimpleUserContext (implements org.embl.ebi.escience.scufl.enactor.UserContext)
  • org.embl.ebi.escience.scuflworkers.java.SliceList (implements org.embl.ebi.escience.scuflworkers.java.LocalWorkerWithPorts, org.embl.ebi.escience.scuflworkers.java.XMLExtensible)
  • org.embl.ebi.escience.scuflworkers.soaplab.Soap
  • org.embl.ebi.escience.scuflworkers.soaplab.SoaplabCategory
  • org.embl.ebi.escience.scuflworkers.soaplab.test.SoaplabProcessorCreation
  • org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavengerAgent
  • org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavengerHelper (implements org.embl.ebi.escience.scuflworkers.ScavengerHelper)
  • org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.soaplab.SoaplabXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.embl.ebi.escience.scuflui.dnd.SpecFragment (implements java.io.Serializable)
    • org.embl.ebi.escience.scuflui.dnd.FactorySpecFragment (implements java.io.Serializable)
    • org.embl.ebi.escience.scuflui.dnd.ProcessorSpecFragment (implements java.io.Serializable)
  • org.embl.ebi.escience.scuflui.dnd.SpecFragmentTransferable (implements java.awt.datatransfer.Transferable)
  • net.sf.taverna.raven.spi.SpiRegistry (implements net.sf.taverna.raven.spi.ArtifactFilterListener, java.lang.Iterable<T>)
  • net.sf.taverna.t2.spi.SPIRegistry<SPI> (implements net.sf.taverna.t2.lang.observer.Observable<Message>)
    • net.sf.taverna.t2.util.beanable.BeanableFactoryRegistry
  • net.sf.taverna.t2.spi.SPIRegistry.RegistryListenerAdapter (implements net.sf.taverna.raven.spi.InstanceRegistryListener)
  • net.sf.taverna.t2.spi.SPIRegistry.SPIRegistryEvent
  • net.sf.taverna.t2.spi.SPIRegistryTest
  • org.embl.ebi.escience.scuflworkers.java.SplitByRegex (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.jdbc.SQLQueryWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
    • net.sourceforge.taverna.scuflworkers.jdbc.SQLUpdateWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.java.StringConcat (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.stringconstant.StringConstantEditor (implements org.embl.ebi.escience.scuflworkers.ProcessorEditor)
  • org.embl.ebi.escience.scuflworkers.stringconstant.StringConstantTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.stringconstant.StringConstantXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.embl.ebi.escience.scuflworkers.java.StringListMerge (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.java.StringSetDifference (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.java.StringSetIntersection (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.java.StringSetUnion (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.baclava.lsid.StupidLSIDProvider (implements org.embl.ebi.escience.baclava.LSIDProvider)
  • net.sourceforge.taverna.scuflworkers.biojava.SwissProtParserWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sf.taverna.t2.partition.ui.TableTreeNodeRenderer (implements javax.swing.tree.TreeCellRenderer)
  • org.embl.ebi.escience.scuflworkers.talisman.test.TalismanProcessorCreation
  • org.embl.ebi.escience.scuflworkers.talisman.TalismanScavengerHelper (implements org.embl.ebi.escience.scuflworkers.ScavengerHelper)
  • org.embl.ebi.escience.scuflworkers.talisman.TalismanTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.talisman.TalismanXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • uk.ac.soton.itinnovation.taverna.enactor.broker.TavernaBinaryWorkflowSubmission
  • net.sf.taverna.tools.TavernaBootstrapLocation
  • org.embl.ebi.escience.scuflui.TavernaIcons
  • org.embl.ebi.escience.utils.TavernaSPIRegistry<T>
    • org.embl.ebi.escience.scuflui.facets.FacetFinderRegistry
    • org.embl.ebi.escience.scuflworkers.java.LocalWorkerRegistry
    • net.sf.taverna.perspectives.PerspectiveRegistry
    • org.embl.ebi.escience.scuflui.actions.ProcessorActionRegistry
    • org.embl.ebi.escience.scuflworkers.ProcessorRegistry
    • org.embl.ebi.escience.scuflui.renderers.RendererRegistry
    • org.embl.ebi.escience.scuflui.results.ResultMapSaveRegistry
    • org.embl.ebi.escience.scuflui.workbench.scavenger.spi.ScavengerActionRegistry
    • org.embl.ebi.escience.scuflworkers.ScavengerHelperRegistry
    • org.embl.ebi.escience.scuflui.workbench.scavenger.spi.ScavengerRegistry
    • org.embl.ebi.escience.scuflui.actions.ScuflModelActionRegistry
    • org.embl.ebi.escience.scufl.enactor.implementation.WorkflowEventListenerRegistry
  • uk.ac.soton.itinnovation.taverna.enactor.broker.TavernaStringifiedWorkflowSubmission
  • org.embl.ebi.escience.scuflui.TemplateEditorFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • org.embl.ebi.escience.scuflworkers.java.TestAlwaysFailingProcessor (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sf.taverna.raven.prelauncher.TestClassLocation
  • net.sf.taverna.raven.prelauncher.TestClassLocation.InnerClass
  • net.sf.taverna.raven.helloworld.TestHelloWorld
  • net.sf.taverna.raven.plugins.TestPluginLoadFromXML
  • org.embl.ebi.escience.scuflworkers.java.TestSometimesFails (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.io.TextFileReader (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.io.TextFileWriter (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • java.lang.Thread (implements java.lang.Runnable)
    • org.biomoby.client.taverna.plugin.PopupThread
    • org.biomoby.client.taverna.plugin.RetrieveWsdlThread
    • org.embl.ebi.escience.scuflui.shared.StreamCopier
    • net.sf.taverna.t2.lang.io.StreamCopier
    • org.embl.ebi.escience.scuflui.shared.StreamDevourer
    • net.sf.taverna.t2.lang.io.StreamDevourer
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.embl.ebi.escience.baclava.store.DuplicateLSIDException
      • org.embl.ebi.escience.scuflworkers.soaplab.MissingSoaplabException
      • org.embl.ebi.escience.baclava.store.NoSuchLSIDException
      • net.sourceforge.taverna.publish.PublicationException
      • net.sf.taverna.raven.RavenException
        • net.sf.taverna.raven.repository.ArtifactNotFoundException
        • net.sf.taverna.raven.repository.ArtifactStateException
        • net.sf.taverna.raven.spi.InvalidProfileException
      • java.lang.RuntimeException
        • org.embl.ebi.escience.baclava.NoMetadataFoundException
        • net.sf.taverna.t2.util.beanable.RetrievalException
        • net.sf.taverna.t2.util.beanable.StorageException
      • org.embl.ebi.escience.scufl.ScuflException
        • org.embl.ebi.escience.scufl.ConcurrencyConstraintCreationException
        • org.embl.ebi.escience.scufl.DataConstraintCreationException
        • org.embl.ebi.escience.scufl.DuplicateConcurrencyConstraintNameException
        • org.embl.ebi.escience.scufl.DuplicatePortNameException
        • org.embl.ebi.escience.scufl.DuplicateProcessorNameException
        • org.embl.ebi.escience.scuflui.InputsNotMatchingException
        • org.embl.ebi.escience.scufl.MalformedNameException
        • org.embl.ebi.escience.scuflui.shared.NoContextMenuFoundException
        • org.embl.ebi.escience.scufl.PortCreationException
        • org.embl.ebi.escience.scufl.ProcessorCreationException
        • org.embl.ebi.escience.scuflui.renderers.RendererException
        • org.embl.ebi.escience.scuflui.workbench.ScavengerCreationException
        • org.embl.ebi.escience.scufl.SetOnlineException
        • org.embl.ebi.escience.scufl.UnknownPortException
        • org.embl.ebi.escience.scufl.UnknownProcessorException
        • org.embl.ebi.escience.scufl.enactor.UnknownWorkflowInstanceException
        • org.embl.ebi.escience.scufl.enactor.WorkflowSubmissionException
        • org.embl.ebi.escience.scufl.parser.XScuflFormatException
      • uk.ac.soton.itinnovation.taverna.enactor.entities.TaskExecutionException
      • net.sourceforge.taverna.io.TransmitterException
      • uk.ac.soton.itinnovation.taverna.enactor.broker.WorkflowSubmitException
  • org.embl.ebi.escience.scuflui.facets.ToString (implements org.embl.ebi.escience.scuflui.spi.FacetFinderSPI)
  • net.sourceforge.taverna.scuflworkers.biojava.TranscribeWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.baclava.factory.TransferableDataThing (implements java.awt.datatransfer.Transferable)
  • uk.ac.soton.itinnovation.taverna.enactor.entities.TransformDataThing
  • net.sourceforge.taverna.scuflworkers.biojava.TranslateWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.biomoby.client.taverna.plugin.TreeUtils
  • org.embl.ebi.escience.scuflui.shared.UIUtils
  • org.embl.ebi.escience.baclava.lsid.UUIDLSIDProvider (implements org.embl.ebi.escience.baclava.LSIDProvider)
  • net.sourceforge.taverna.scuflworkers.io.VelocityFileWriter (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflui.graph.VirtualNode
    • org.embl.ebi.escience.scuflui.graph.IntermediateNode
  • org.embl.ebi.escience.scuflworkers.java.WebImageFetcher (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.java.WebPageFetcher (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scuflworkers.web.WebScavengerHelperImpl (implements org.embl.ebi.escience.scuflworkers.ScavengerHelper, org.embl.ebi.escience.scuflworkers.web.WebScavengerHelper)
  • org.embl.ebi.escience.scuflui.workbench.Workbench.CurrentWorkflowListener (implements org.embl.ebi.escience.scuflui.shared.ModelMap.ModelChangeListener)
  • org.embl.ebi.escience.scuflui.workbench.Workbench.DebugListener (implements org.embl.ebi.escience.scuflui.shared.ModelMap.ModelChangeListener)
  • org.embl.ebi.escience.scuflui.workbench.Workbench.WorkflowInstanceListener (implements org.embl.ebi.escience.scuflui.shared.ModelMap.ModelChangeListener)
  • org.embl.ebi.escience.scuflui.workbench.WorkbenchPerspectives
  • org.embl.ebi.escience.scuflui.workbench.WorkbenchPerspectives.CurrentPerspectiveListener (implements org.embl.ebi.escience.scuflui.shared.ModelMap.ModelChangeListener)
  • org.embl.ebi.escience.scuflui.shared.WorkflowChanges
  • org.embl.ebi.escience.scufl.WorkflowDescription
  • org.embl.ebi.escience.scuflui.graph.WorkflowEditorFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • org.embl.ebi.escience.scuflworkers.workflow.WorkflowEditProcessorAction (implements org.embl.ebi.escience.scuflui.spi.ProcessorActionSPI)
  • org.embl.ebi.escience.scufl.enactor.WorkflowEventAdapter (implements org.embl.ebi.escience.scufl.enactor.WorkflowEventListener)
    • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellConnectionManager
  • org.embl.ebi.escience.scufl.enactor.implementation.WorkflowEventDispatcher
  • org.embl.ebi.escience.scuflui.WorkflowInputMapBuilder.TreeTransferHandler (implements java.awt.dnd.DropTargetListener)
  • org.embl.ebi.escience.scuflui.WorkflowInputPanelFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • org.embl.ebi.escience.scuflui.WorkflowInstanceContainerFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • org.embl.ebi.escience.scufl.enactor.event.WorkflowInstanceEvent
    • org.embl.ebi.escience.scufl.enactor.event.CollectionConstructionEvent
    • org.embl.ebi.escience.scufl.enactor.event.IterationCompletionEvent
    • org.embl.ebi.escience.scufl.enactor.event.NestedWorkflowCompletionEvent
    • org.embl.ebi.escience.scufl.enactor.event.NestedWorkflowCreationEvent
    • org.embl.ebi.escience.scufl.enactor.event.NestedWorkflowFailureEvent
    • org.embl.ebi.escience.scufl.enactor.event.ProcessCompletionEvent
    • org.embl.ebi.escience.scufl.enactor.event.ProcessFailureEvent
    • org.embl.ebi.escience.scufl.enactor.event.UserChangedDataEvent
    • org.embl.ebi.escience.scufl.enactor.event.WorkflowCompletionEvent
    • org.embl.ebi.escience.scufl.enactor.event.WorkflowCreationEvent
    • org.embl.ebi.escience.scufl.enactor.event.WorkflowDestroyedEvent
    • org.embl.ebi.escience.scufl.enactor.event.WorkflowFailureEvent
    • org.embl.ebi.escience.scufl.enactor.event.WorkflowToBeDestroyedEvent
  • org.embl.ebi.escience.scufl.enactor.implementation.WorkflowInstanceImpl (implements org.embl.ebi.escience.scufl.enactor.WorkflowInstance)
  • org.embl.ebi.escience.scufl.tools.WorkflowLauncher
  • net.sf.taverna.example.WorkflowLauncherWrapper
  • org.embl.ebi.escience.scuflworkers.workflow.WorkflowScavengerHelper (implements org.embl.ebi.escience.scuflworkers.ScavengerHelper)
  • org.embl.ebi.escience.scufl.view.WorkflowSummaryAsHTML
  • org.embl.ebi.escience.scuflworkers.workflow.WorkflowTask (implements uk.ac.soton.itinnovation.taverna.enactor.entities.EnactorWorkflowTask, org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.workflow.WorkflowXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.embl.ebi.escience.scuflworkers.wsdl.WSDLInvocationTask (implements org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker)
  • org.embl.ebi.escience.scuflworkers.wsdl.WSDLScavengerHelper (implements org.embl.ebi.escience.scuflworkers.ScavengerHelper)
  • org.embl.ebi.escience.scuflworkers.wsdl.WSDLXMLHandler (implements org.embl.ebi.escience.scuflworkers.XMLHandler)
  • org.embl.ebi.escience.scuflworkers.java.XMLInputSplitter (implements org.embl.ebi.escience.scuflworkers.java.LocalWorkerWithPorts, org.embl.ebi.escience.scuflworkers.java.XMLExtensible)
  • org.apache.xmlbeans.impl.values.XmlObjectBase (implements java.io.Serializable, org.apache.xmlbeans.SimpleValue, org.apache.xmlbeans.impl.values.TypeStoreUser, org.apache.xmlbeans.XmlObject)
    • org.apache.xmlbeans.impl.values.XmlComplexContentImpl
      • net.sf.taverna.x2008.xml.plugins.impl.ApplicationImpl (implements net.sf.taverna.x2008.xml.plugins.Application)
      • net.sf.taverna.x2008.xml.plugins.impl.ArtifactImpl (implements net.sf.taverna.x2008.xml.plugins.Artifact)
      • net.sf.taverna.x2008.xml.plugins.impl.CompatibilityImpl (implements net.sf.taverna.x2008.xml.plugins.Compatibility)
      • net.sf.taverna.x2008.xml.plugins.impl.DependencyImpl (implements net.sf.taverna.x2008.xml.plugins.Dependency)
      • net.sf.taverna.x2008.xml.plugins.impl.IdentifiedPluginImpl (implements net.sf.taverna.x2008.xml.plugins.IdentifiedPlugin)
        • net.sf.taverna.x2008.xml.plugins.impl.DescribedPluginImpl (implements net.sf.taverna.x2008.xml.plugins.DescribedPlugin)
      • net.sf.taverna.x2008.xml.plugins.impl.PluginDocumentImpl (implements net.sf.taverna.x2008.xml.plugins.PluginDocument)
      • net.sf.taverna.x2008.xml.plugins.impl.PluginsDocumentImpl (implements net.sf.taverna.x2008.xml.plugins.PluginsDocument)
      • net.sf.taverna.x2008.xml.plugins.impl.PluginsImpl (implements net.sf.taverna.x2008.xml.plugins.Plugins)
      • net.sf.taverna.x2008.xml.plugins.impl.ProfileImpl (implements net.sf.taverna.x2008.xml.plugins.Profile)
      • net.sf.taverna.x2008.xml.plugins.impl.RepositoriesImpl (implements net.sf.taverna.x2008.xml.plugins.Repositories)
  • org.embl.ebi.escience.scuflworkers.java.XMLOutputSplitter (implements org.embl.ebi.escience.scuflworkers.java.LocalWorkerWithPorts, org.embl.ebi.escience.scuflworkers.java.XMLExtensible)
  • org.embl.ebi.escience.scuflworkers.java.XMLSplitterScuflContextMenuFactory
  • net.sourceforge.taverna.util.XmlUtil
  • org.biomoby.client.taverna.plugin.XMLUtilities
  • org.biomoby.client.taverna.plugin.XMLUtilitiesTest
  • net.sourceforge.taverna.publish.XPathFileSelector (implements org.apache.commons.vfs.FileSelector)
  • net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.xml.XPathWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sourceforge.taverna.scuflworkers.xml.XQueryWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • org.embl.ebi.escience.scufl.XScufl
  • org.embl.ebi.escience.scufl.tools.XScufl2Dot
  • org.embl.ebi.escience.scufl.parser.XScuflParser
  • org.embl.ebi.escience.scuflui.XScuflTextAreaFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • org.embl.ebi.escience.scuflui.XScuflTreeFactory (implements org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI)
  • org.embl.ebi.escience.scufl.view.XScuflView (implements org.embl.ebi.escience.scufl.ScuflModelEventListener, java.io.Serializable)
  • net.sourceforge.taverna.scuflworkers.ncbi.XSLTStreamProcessor (implements net.sourceforge.taverna.io.StreamProcessor)
  • net.sourceforge.taverna.scuflworkers.xml.XSLTWorker (implements org.embl.ebi.escience.scuflworkers.java.LocalWorker)
  • net.sf.taverna.zaria.ZIcons

Interface Hierarchy

• net.sf.taverna.raven.spi.ArtifactFilter
• net.sf.taverna.raven.spi.ArtifactFilterListener
• org.embl.ebi.escience.baclava.store.BaclavaDataService
• net.sf.taverna.t2.util.beanable.Beanable<Bean>
• java.lang.Comparable<T>
  • net.sf.taverna.raven.repository.Artifact
• net.sf.taverna.raven.repository.DownloadStatus
• net.sf.taverna.t2.spi.DummySPI
• org.embl.ebi.escience.scufl.enactor.EnactorProxy
  • org.embl.ebi.escience.scufl.enactor.ResumableEnactorProxy
• uk.ac.soton.itinnovation.taverna.enactor.entities.EnactorWorkflowTask
• java.util.EventListener
  • java.awt.dnd.DragGestureListener
    • org.embl.ebi.escience.scuflui.workbench.ScavengerTree (also extends java.awt.dnd.DragSourceListener, java.awt.dnd.DropTargetListener)
  • java.awt.dnd.DragSourceListener
    • org.embl.ebi.escience.scuflui.workbench.ScavengerTree (also extends java.awt.dnd.DragGestureListener, java.awt.dnd.DropTargetListener)
  • java.awt.dnd.DropTargetListener
    • org.embl.ebi.escience.scuflui.workbench.ScavengerTree (also extends java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener)
  • org.embl.ebi.escience.scuflui.facets.FTableColumnModelListener
  • net.sf.taverna.update.plugin.event.PluginListener
  • net.sf.taverna.raven.plugins.event.PluginListener
  • net.sf.taverna.update.plugin.event.PluginManagerListener
  • net.sf.taverna.raven.plugins.event.PluginManagerListener
  • org.embl.ebi.escience.scuflui.workbench.ScavengerTree (also extends java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener, java.awt.dnd.DropTargetListener)
• org.embl.ebi.escience.scuflui.spi.FacetFinderSPI
• org.embl.ebi.escience.scuflui.spi.FacetFinderSPI.ColumnID
• org.embl.ebi.escience.scuflui.workbench.FileDrop.Listener
• net.sourceforge.taverna.publish.FileFilter
• org.embl.ebi.escience.scuflworkers.HTMLSummarisableProcessor
• net.sf.taverna.raven.spi.InstanceRegistryListener
• org.embl.ebi.escience.scufl.IProcessor
• org.embl.ebi.escience.scufl.IProcessorTask
• java.lang.Iterable<T>
  • java.util.Collection<E>
    • net.sf.taverna.t2.partition.Query<ItemType>
    • java.util.Set<E>
      • net.sf.taverna.t2.partition.Query<ItemType>
      • net.sf.taverna.t2.partition.SetModel<ItemType>
        • net.sf.taverna.t2.partition.Query<ItemType>
    • net.sf.taverna.t2.partition.SetModel<ItemType>
      • net.sf.taverna.t2.partition.Query<ItemType>
  • net.sf.taverna.t2.partition.Query<ItemType>
  • java.util.Set<E>
    • net.sf.taverna.t2.partition.Query<ItemType>
    • net.sf.taverna.t2.partition.SetModel<ItemType>
      • net.sf.taverna.t2.partition.Query<ItemType>
  • net.sf.taverna.t2.partition.SetModel<ItemType>
    • net.sf.taverna.t2.partition.Query<ItemType>
• java.util.Iterator<E>
  • org.embl.ebi.escience.baclava.iterator.ResumableIterator
• net.sf.taverna.raven.launcher.Launchable
• org.embl.ebi.escience.scuflworkers.java.LocalWorker
  • org.embl.ebi.escience.scuflworkers.java.LocalWorkerWithPorts
• net.sf.taverna.raven.log.LogInterface
• org.embl.ebi.escience.baclava.LSIDProvider
• org.embl.ebi.escience.scuflui.shared.ModelMap.ModelChangeListener
• net.sf.taverna.t2.lang.observer.Observable<Message>
• net.sf.taverna.t2.lang.observer.Observer<Message>
• net.sf.taverna.t2.partition.PartitionAlgorithm<ValueType>
• net.sf.taverna.t2.partition.PartitionAlgorithmSetSPI
• net.sf.taverna.perspectives.PerspectiveSPI
  • net.sf.taverna.perspectives.WorkflowPerspective
• org.embl.ebi.escience.scuflui.spi.ProcessorActionSPI
• org.embl.ebi.escience.scuflworkers.ProcessorEditor
• org.embl.ebi.escience.scuflworkers.ProcessorInfoBean
• org.embl.ebi.escience.scuflworkers.ProcessorTaskWorker
• net.sf.taverna.t2.partition.PropertyExtractorRegistry
• net.sf.taverna.t2.partition.PropertyExtractorSPI
• net.sf.taverna.raven.spi.RegistryListener
• org.embl.ebi.escience.scuflui.spi.RendererSPI
• net.sf.taverna.raven.repository.Repository
• net.sourceforge.taverna.publish.Repository
• net.sf.taverna.raven.repository.RepositoryListener
• org.embl.ebi.escience.scuflui.spi.ResultMapSaveSPI
• org.embl.ebi.escience.scuflui.results.ResultTable.TableSelectionListener
• org.embl.ebi.escience.scuflui.workbench.scavenger.spi.ScavengerActionSPI
• org.embl.ebi.escience.scuflworkers.ScavengerHelper
• org.embl.ebi.escience.scuflworkers.ScuflContextMenuAware
• org.embl.ebi.escience.scufl.ScuflModelEventListener
• org.embl.ebi.escience.scuflui.shared.ScuflModelSet.ScuflModelSetListener
• org.embl.ebi.escience.scufl.ScuflWorkflowProcessor
• org.embl.ebi.escience.scufl.ScuflWorkflowProcessorFactory
• net.sf.taverna.t2.partition.SetModelChangeListener<ItemType>
• net.sourceforge.taverna.io.StreamProcessor
• net.sourceforge.taverna.io.StreamTransmitter
• net.sf.taverna.t2.partition.ui.TableTreeNodeColumn
• javax.swing.tree.TreeModel
  • org.embl.ebi.escience.treetable.TreeTableModel
• org.embl.ebi.escience.scuflui.spi.UIComponentFactorySPI
• org.embl.ebi.escience.scuflui.spi.UIComponentSPI
  • org.embl.ebi.escience.scuflui.spi.ProcessorViewSPI
  • org.embl.ebi.escience.scuflui.spi.SemanticMarkupViewSPI
  • org.embl.ebi.escience.scuflui.spi.WorkflowInstanceSetViewSPI
  • org.embl.ebi.escience.scuflui.spi.WorkflowModelViewSPI
• org.embl.ebi.escience.scuflui.shared.UIUtils.FrameCreator
• org.embl.ebi.escience.scufl.enactor.UserContext
• org.embl.ebi.escience.scuflworkers.web.WebScavengerHelper
• org.embl.ebi.escience.scufl.enactor.WorkflowEventListener
• org.embl.ebi.escience.scufl.enactor.WorkflowInstance
• org.embl.ebi.escience.scuflworkers.java.XMLExtensible
• org.embl.ebi.escience.scuflworkers.XMLHandler
• org.apache.xmlbeans.XmlTokenSource
  • net.sf.taverna.x2008.xml.plugins.Application
  • net.sf.taverna.x2008.xml.plugins.Artifact
  • net.sf.taverna.x2008.xml.plugins.Compatibility
  • net.sf.taverna.x2008.xml.plugins.Dependency
  • net.sf.taverna.x2008.xml.plugins.DescribedPlugin
  • net.sf.taverna.x2008.xml.plugins.IdentifiedPlugin
    • net.sf.taverna.x2008.xml.plugins.DescribedPlugin
  • net.sf.taverna.x2008.xml.plugins.PluginDocument
  • net.sf.taverna.x2008.xml.plugins.Plugins
  • net.sf.taverna.x2008.xml.plugins.PluginsDocument
  • net.sf.taverna.x2008.xml.plugins.Profile
  • net.sf.taverna.x2008.xml.plugins.Repositories
  • org.apache.xmlbeans.XmlObject
    • net.sf.taverna.x2008.xml.plugins.Application
    • net.sf.taverna.x2008.xml.plugins.Artifact
    • net.sf.taverna.x2008.xml.plugins.Compatibility
    • net.sf.taverna.x2008.xml.plugins.Dependency
    • net.sf.taverna.x2008.xml.plugins.DescribedPlugin
    • net.sf.taverna.x2008.xml.plugins.IdentifiedPlugin
      • net.sf.taverna.x2008.xml.plugins.DescribedPlugin
    • net.sf.taverna.x2008.xml.plugins.PluginDocument
    • net.sf.taverna.x2008.xml.plugins.Plugins
    • net.sf.taverna.x2008.xml.plugins.PluginsDocument
    • net.sf.taverna.x2008.xml.plugins.Profile
    • net.sf.taverna.x2008.xml.plugins.Repositories
• net.sf.taverna.zaria.ZTreeNode

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • net.sf.taverna.raven.repository.ArtifactStatus (implements java.lang.Comparable<T>)
    • nl.utwente.ewi.hmi.taverna.scuflworkers.rshell.RshellPortTypes.SymanticTypes
    • org.embl.ebi.escience.scuflworkers.dependency.DependencyProcessor.ClassLoaderSharing
    • net.sf.taverna.raven.log.LogInterface.Priority