Uses of Class
org.embl.ebi.escience.scufl.parser.XScuflFormatException

Packages that use XScuflFormatException

net.sourceforge.taverna.scuflworkers.bsf	Provides LocalWorkers capable of handling scripts written in any Bean Scripting Framework language.
nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor
nl.utwente.ewi.hmi.taverna.scuflworkers.rshell
org.biomoby.client.taverna.plugin
org.embl.ebi.escience.scufl.parser	Provides functionality to populate ScuflModel instances from textual and XML dialects of the Scufl language.
org.embl.ebi.escience.scufl.tools	Provides user level command line and graphical tools to manipulate and display scufl model instances.
org.embl.ebi.escience.scufl.view	Provides classes that present a view on a ScuflModel instance.
org.embl.ebi.escience.scuflworkers
org.embl.ebi.escience.scuflworkers.apiconsumer
org.embl.ebi.escience.scuflworkers.beanshell
org.embl.ebi.escience.scuflworkers.biomart
org.embl.ebi.escience.scuflworkers.biomoby
org.embl.ebi.escience.scuflworkers.inferno
org.embl.ebi.escience.scuflworkers.java
org.embl.ebi.escience.scuflworkers.notification
org.embl.ebi.escience.scuflworkers.rdfgenerator
org.embl.ebi.escience.scuflworkers.rserv
org.embl.ebi.escience.scuflworkers.soaplab
org.embl.ebi.escience.scuflworkers.stringconstant
org.embl.ebi.escience.scuflworkers.talisman
org.embl.ebi.escience.scuflworkers.workflow
org.embl.ebi.escience.scuflworkers.wsdl

Uses of XScuflFormatException in net.sourceforge.taverna.scuflworkers.bsf

Methods in net.sourceforge.taverna.scuflworkers.bsf that throw XScuflFormatException

Processor

BSFXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor

Methods in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor that throw XScuflFormatException

Processor

APXMLHandler.loadProcessorFromXML(org.jdom.Element processorElement, ScuflModel model, java.lang.String name) Method for loading an xml processor from XML

Uses of XScuflFormatException in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell

Methods in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell that throw XScuflFormatException

Processor

RshellXMLHandler.loadProcessorFromXML(org.jdom.Element processorElement, ScuflModel model, java.lang.String name) Method for loading an xml processor from XML

Uses of XScuflFormatException in org.biomoby.client.taverna.plugin

Methods in org.biomoby.client.taverna.plugin that throw XScuflFormatException

Processor	MobyParseDatatypeXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
Processor	BiomobyXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String processorName)
Processor	BiomobyObjectXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String processorName)

Uses of XScuflFormatException in org.embl.ebi.escience.scufl.parser

Methods in org.embl.ebi.escience.scufl.parser that throw XScuflFormatException

static void	XScuflParser.populate(org.jdom.Document document, ScuflModel model, java.lang.String prefix) Read from the given JDOM Document and populate the given ScuflModel with data from the definition.
static void	XScuflParser.populate(java.io.InputStream is, ScuflModel model, java.lang.String prefix) Read from the given InputStream and populate the given ScuflModel with data from the definition.
static void	XScuflParser.populate(java.lang.String input, ScuflModel model, java.lang.String prefix) Read from the given String containing an XScufl document and populate the given ScuflModel with data from the definition.

Uses of XScuflFormatException in org.embl.ebi.escience.scufl.tools

Constructors in org.embl.ebi.escience.scufl.tools that throw XScuflFormatException

WorkflowLauncher(java.io.InputStream xmlStream)
Set userContext and instantiate the WorkflowLauncher, constructing an instance of the ScuflModel from the XML provided by the given input stream.

WorkflowLauncher(java.io.InputStream xmlStream, UserContext userContext)
Set userContext and instantiate the WorkflowLauncher, constructing an instance of the ScuflModel from the XML provided by the given input stream.

WorkflowLauncher(java.net.URL url)
Instantiate the WorkflowLauncher, constructing an instance of the ScuflModel from the XML in the provided url

WorkflowLauncher(java.net.URL url, UserContext userContext)
Instantiate the WorkflowLauncher, constructing an instance of the ScuflModel from the XML in the provided url

Uses of XScuflFormatException in org.embl.ebi.escience.scufl.view

Methods in org.embl.ebi.escience.scufl.view that throw XScuflFormatException

void	XScuflViewTest.testLoading() Attempts to load data into a ScuflModel from the same source that the XScuflParserTest uses, then print out the XScufl text from the XScuflView.

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers

Methods in org.embl.ebi.escience.scuflworkers that throw XScuflFormatException

static Processor	ProcessorHelper.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name) Spit back a processor given a chunk of xml, the element passed in being the 'processor' tag return null if we can't handle it
Processor	XMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name) Create a new processor from the given chunk of XML

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.apiconsumer

Methods in org.embl.ebi.escience.scuflworkers.apiconsumer that throw XScuflFormatException

Processor

APIConsumerXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.beanshell

Methods in org.embl.ebi.escience.scuflworkers.beanshell that throw XScuflFormatException

Processor

BeanshellXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.biomart

Methods in org.embl.ebi.escience.scuflworkers.biomart that throw XScuflFormatException

Processor

BiomartXMLHandler.loadProcessorFromXML(org.jdom.Element element, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.biomoby

Methods in org.embl.ebi.escience.scuflworkers.biomoby that throw XScuflFormatException

Processor

BiomobyXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String processorName)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.inferno

Methods in org.embl.ebi.escience.scuflworkers.inferno that throw XScuflFormatException

Processor

InfernoXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.java

Methods in org.embl.ebi.escience.scuflworkers.java that throw XScuflFormatException

Processor

LocalServiceXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.notification

Methods in org.embl.ebi.escience.scuflworkers.notification that throw XScuflFormatException

Processor

NotificationXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.rdfgenerator

Methods in org.embl.ebi.escience.scuflworkers.rdfgenerator that throw XScuflFormatException

Processor

RDFGeneratorXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.rserv

Methods in org.embl.ebi.escience.scuflworkers.rserv that throw XScuflFormatException

Processor

RservXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.soaplab

Methods in org.embl.ebi.escience.scuflworkers.soaplab that throw XScuflFormatException

Processor

SoaplabXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.stringconstant

Methods in org.embl.ebi.escience.scuflworkers.stringconstant that throw XScuflFormatException

Processor

StringConstantXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.talisman

Methods in org.embl.ebi.escience.scuflworkers.talisman that throw XScuflFormatException

Processor

TalismanXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.workflow

Methods in org.embl.ebi.escience.scuflworkers.workflow that throw XScuflFormatException

Processor

WorkflowXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Uses of XScuflFormatException in org.embl.ebi.escience.scuflworkers.wsdl

Methods in org.embl.ebi.escience.scuflworkers.wsdl that throw XScuflFormatException

Processor

WSDLXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)