Uses of Class
org.embl.ebi.escience.scufl.ProcessorCreationException

Packages that use ProcessorCreationException

net.sourceforge.taverna.scuflworkers.bsf	Provides LocalWorkers capable of handling scripts written in any Bean Scripting Framework language.
nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor
nl.utwente.ewi.hmi.taverna.scuflworkers.rshell
org.biomoby.client.taverna.plugin
org.embl.ebi.escience.scufl	Provides the object model for the Simple Conceptual Unified Flow Language (Scufl).
org.embl.ebi.escience.scufl.parser	Provides functionality to populate ScuflModel instances from textual and XML dialects of the Scufl language.
org.embl.ebi.escience.scufl.tools	Provides user level command line and graphical tools to manipulate and display scufl model instances.
org.embl.ebi.escience.scufl.view	Provides classes that present a view on a ScuflModel instance.
org.embl.ebi.escience.scuflworkers
org.embl.ebi.escience.scuflworkers.apiconsumer
org.embl.ebi.escience.scuflworkers.beanshell
org.embl.ebi.escience.scuflworkers.biomart
org.embl.ebi.escience.scuflworkers.biomoby
org.embl.ebi.escience.scuflworkers.dependency
org.embl.ebi.escience.scuflworkers.inferno
org.embl.ebi.escience.scuflworkers.java
org.embl.ebi.escience.scuflworkers.notification
org.embl.ebi.escience.scuflworkers.rdfgenerator
org.embl.ebi.escience.scuflworkers.rserv
org.embl.ebi.escience.scuflworkers.soaplab
org.embl.ebi.escience.scuflworkers.stringconstant
org.embl.ebi.escience.scuflworkers.talisman
org.embl.ebi.escience.scuflworkers.workflow
org.embl.ebi.escience.scuflworkers.wsdl

Uses of ProcessorCreationException in net.sourceforge.taverna.scuflworkers.bsf

Methods in net.sourceforge.taverna.scuflworkers.bsf that throw ProcessorCreationException

Processor

BSFXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in net.sourceforge.taverna.scuflworkers.bsf that throw ProcessorCreationException

BSFProcessor(ScuflModel model, java.lang.String name, java.lang.String script, java.lang.String[] inputs, java.lang.String[] outputs)
Construct a new processor with the given model and name, delegates to the superclass and sets the script up correctly along with the input and output port name arrays.

Uses of ProcessorCreationException in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor

Methods in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor that throw ProcessorCreationException

Processor

APXMLHandler.loadProcessorFromXML(org.jdom.Element processorElement, ScuflModel model, java.lang.String name) Method for loading an xml processor from XML

Constructors in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor that throw ProcessorCreationException

APProcessor(ScuflModel model, java.lang.String name)
Constructor of the abstract processor

Uses of ProcessorCreationException in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell

Methods in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell that throw ProcessorCreationException

Processor

RshellXMLHandler.loadProcessorFromXML(org.jdom.Element processorElement, ScuflModel model, java.lang.String name) Method for loading an xml processor from XML

Constructors in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell that throw ProcessorCreationException

RshellProcessor(ScuflModel model, java.lang.String name)

Uses of ProcessorCreationException in org.biomoby.client.taverna.plugin

Methods in org.biomoby.client.taverna.plugin that throw ProcessorCreationException

void	BiomobyProcessor.generatePorts() Use the endpoint data to create new ports and attach them to the processor.
void	BiomobyObjectProcessor.generatePorts()
void	BiomobyProcessor.getDescriptionText() Set the description field
void	BiomobyObjectProcessor.getDescriptionText() Set the description field
Processor	MobyParseDatatypeXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
Processor	BiomobyXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String processorName)
Processor	BiomobyObjectXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String processorName)

Constructors in org.biomoby.client.taverna.plugin that throw ProcessorCreationException

BiomobyObjectProcessor(ScuflModel model, java.lang.String processorName, org.biomoby.shared.MobyDataType service, java.lang.String mobyEndpoint)
Construct a new processor with the given model and name, delegates to the superclass.

BiomobyObjectProcessor(ScuflModel model, java.lang.String processorName, java.lang.String authorityName, java.lang.String serviceName, java.lang.String mobyEndpoint)
Construct a new processor with the given model and name, delegates to the superclass.

BiomobyObjectProcessor(ScuflModel model, java.lang.String processorName, java.lang.String authorityName, java.lang.String serviceName, java.lang.String mobyEndpoint, boolean prompt)

BiomobyProcessor(ScuflModel model, java.lang.String processorName, org.biomoby.shared.MobyService service, java.lang.String mobyEndpoint)
Construct a new processor with the given model and name, delegates to the superclass.

BiomobyProcessor(ScuflModel model, java.lang.String processorName, java.lang.String authorityName, java.lang.String serviceName, java.lang.String mobyEndpoint)
Construct a new processor with the given model and name, delegates to the superclass.

MobyParseDatatypeProcessor(ScuflModel model, java.lang.String workflowName, org.biomoby.shared.MobyDataType datatype, java.lang.String articleName, java.lang.String registryEndpoint)

MobyParseDatatypeProcessor(ScuflModel model, java.lang.String workflowName, java.lang.String datatypeName, java.lang.String articleName, java.lang.String registryEndpoint)

Uses of ProcessorCreationException in org.embl.ebi.escience.scufl

Methods in org.embl.ebi.escience.scufl that throw ProcessorCreationException

void	ScuflModelTest.testNameStuff()

Constructors in org.embl.ebi.escience.scufl that throw ProcessorCreationException

Processor(ScuflModel model, java.lang.String name)
Construct the processor with the given name and parent, complaining if the name doesn't conform to [a-zA-Z_0-9]

Uses of ProcessorCreationException in org.embl.ebi.escience.scufl.parser

Methods in org.embl.ebi.escience.scufl.parser that throw ProcessorCreationException

static void	XScuflParser.populate(org.jdom.Document document, ScuflModel model, java.lang.String prefix) Read from the given JDOM Document and populate the given ScuflModel with data from the definition.
static void	XScuflParser.populate(java.io.InputStream is, ScuflModel model, java.lang.String prefix) Read from the given InputStream and populate the given ScuflModel with data from the definition.
static void	XScuflParser.populate(java.lang.String input, ScuflModel model, java.lang.String prefix) Read from the given String containing an XScufl document and populate the given ScuflModel with data from the definition.

Uses of ProcessorCreationException in org.embl.ebi.escience.scufl.tools

Constructors in org.embl.ebi.escience.scufl.tools that throw ProcessorCreationException

WorkflowLauncher(java.io.InputStream xmlStream)
Set userContext and instantiate the WorkflowLauncher, constructing an instance of the ScuflModel from the XML provided by the given input stream.

WorkflowLauncher(java.io.InputStream xmlStream, UserContext userContext)
Set userContext and instantiate the WorkflowLauncher, constructing an instance of the ScuflModel from the XML provided by the given input stream.

WorkflowLauncher(java.net.URL url)
Instantiate the WorkflowLauncher, constructing an instance of the ScuflModel from the XML in the provided url

WorkflowLauncher(java.net.URL url, UserContext userContext)
Instantiate the WorkflowLauncher, constructing an instance of the ScuflModel from the XML in the provided url

Uses of ProcessorCreationException in org.embl.ebi.escience.scufl.view

Methods in org.embl.ebi.escience.scufl.view that throw ProcessorCreationException

void	XScuflViewTest.testLoading() Attempts to load data into a ScuflModel from the same source that the XScuflParserTest uses, then print out the XScufl text from the XScuflView.

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers

Methods in org.embl.ebi.escience.scuflworkers that throw ProcessorCreationException

Processor	ProcessorFactory.createProcessor(java.lang.String name, ScuflModel model) Instantiate a new processor with the supplied name and bind it to the specified model.
static Processor	ProcessorHelper.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name) Spit back a processor given a chunk of xml, the element passed in being the 'processor' tag return null if we can't handle it
Processor	XMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name) Create a new processor from the given chunk of XML

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.apiconsumer

Methods in org.embl.ebi.escience.scuflworkers.apiconsumer that throw ProcessorCreationException

Processor

APIConsumerXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.apiconsumer that throw ProcessorCreationException

APIConsumerProcessor(ScuflModel model, java.lang.String name, APIConsumerDefinition definition)

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.beanshell

Methods in org.embl.ebi.escience.scuflworkers.beanshell that throw ProcessorCreationException

Processor

BeanshellXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.beanshell that throw ProcessorCreationException

BeanshellProcessor(ScuflModel model, java.lang.String name, java.lang.String script, java.lang.String[] inputs, java.lang.String[] outputs)
Construct a new processor with the given model and name, delegates to the superclass and sets the script up correctly along with the input and output port name arrays.

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.biomart

Methods in org.embl.ebi.escience.scuflworkers.biomart that throw ProcessorCreationException

Processor

BiomartXMLHandler.loadProcessorFromXML(org.jdom.Element element, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.biomart that throw ProcessorCreationException

BiomartProcessor(ScuflModel model, java.lang.String processorName, org.biomart.martservice.MartQuery query)

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.biomoby

Methods in org.embl.ebi.escience.scuflworkers.biomoby that throw ProcessorCreationException

void	BiomobyProcessor.generatePorts() Use the endpoint data to create new ports and attach them to the processor.
void	BiomobyProcessor.getDescriptionText() Set the description field
Processor	BiomobyXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String processorName)

Constructors in org.embl.ebi.escience.scuflworkers.biomoby that throw ProcessorCreationException

BiomobyProcessor(ScuflModel model, java.lang.String processorName, org.biomoby.shared.MobyService service, java.lang.String mobyEndpoint)
Construct a new processor with the given model and name, delegates to the superclass.

BiomobyProcessor(ScuflModel model, java.lang.String processorName, java.lang.String authorityName, java.lang.String serviceName, java.lang.String mobyEndpoint)
Construct a new processor with the given model and name, delegates to the superclass.

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.dependency

Constructors in org.embl.ebi.escience.scuflworkers.dependency that throw ProcessorCreationException

DependencyProcessor(ScuflModel model, java.lang.String name)

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.inferno

Methods in org.embl.ebi.escience.scuflworkers.inferno that throw ProcessorCreationException

Processor

InfernoXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.inferno that throw ProcessorCreationException

InfernoProcessor(ScuflModel theModel, java.lang.String processorName, java.lang.String host, int port, java.lang.String service)

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.java

Methods in org.embl.ebi.escience.scuflworkers.java that throw ProcessorCreationException

Processor

LocalServiceXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.java that throw ProcessorCreationException

LocalServiceProcessor(ScuflModel model, java.lang.String name, LocalWorker worker)

LocalServiceProcessor(ScuflModel model, java.lang.String name, java.lang.String workerClassName)

LocalServiceProcessor(ScuflModel model, java.lang.String name, java.lang.String workerClassName, org.jdom.Element additionalXML)

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.notification

Methods in org.embl.ebi.escience.scuflworkers.notification that throw ProcessorCreationException

Processor

NotificationXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.notification that throw ProcessorCreationException

NotificationProcessor(ScuflModel model, java.lang.String name)

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.rdfgenerator

Methods in org.embl.ebi.escience.scuflworkers.rdfgenerator that throw ProcessorCreationException

Processor

RDFGeneratorXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.rdfgenerator that throw ProcessorCreationException

RDFGeneratorProcessor(ScuflModel model, java.lang.String name)
Construct a new processor with the given model and name, delegates to the superclass.

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.rserv

Methods in org.embl.ebi.escience.scuflworkers.rserv that throw ProcessorCreationException

Processor	RservXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
void	RservProcessorTest.testDuplicate()

Constructors in org.embl.ebi.escience.scuflworkers.rserv that throw ProcessorCreationException

RservProcessor(ScuflModel model, java.lang.String name)

RservProcessor(ScuflModel model, java.lang.String name, java.lang.String script, java.lang.String[] inputs)
Construct a new processor with the given model and name, delegates to the superclass and sets the script up correctly along with the input and output port name arrays.

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.soaplab

Methods in org.embl.ebi.escience.scuflworkers.soaplab that throw ProcessorCreationException

void	SoaplabProcessor.generatePorts() Use the endpoint data to create new ports and attach them to the processor.
void	SoaplabProcessor.getDescriptionText() Use the endpoint data to set the description field
Processor	SoaplabXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.soaplab that throw ProcessorCreationException

SoaplabProcessor(ScuflModel model, java.lang.String name, java.lang.String endpoint)
Construct a new processor with the given model and name, delegates to the superclass.

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.stringconstant

Methods in org.embl.ebi.escience.scuflworkers.stringconstant that throw ProcessorCreationException

Processor

StringConstantXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.stringconstant that throw ProcessorCreationException

StringConstantProcessor(ScuflModel model, java.lang.String name, java.lang.String value)
Construct a new processor with the given model and name, delegates to the superclass.

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.talisman

Methods in org.embl.ebi.escience.scuflworkers.talisman that throw ProcessorCreationException

Processor

TalismanXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.talisman that throw ProcessorCreationException

TalismanProcessor(ScuflModel model, java.lang.String name, java.lang.String tscript)
Construct a new processor from the supplied Talisman script document.

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.workflow

Methods in org.embl.ebi.escience.scuflworkers.workflow that throw ProcessorCreationException

Processor

WorkflowXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.workflow that throw ProcessorCreationException

WorkflowProcessor(ScuflModel model, java.lang.String name)
Construct a new processor with a blank internal workflow

WorkflowProcessor(ScuflModel model, java.lang.String name, org.jdom.Element scuflElement)
Construct a new processor from the supplied JDOM element, this element being the 'scufl' top level workflow element from an inline nested workflow declaration

WorkflowProcessor(ScuflModel model, java.lang.String name, java.lang.String definitionURL)
Construct a new processor with the given model to bind to, name and URL of a workflow description to contain.

Uses of ProcessorCreationException in org.embl.ebi.escience.scuflworkers.wsdl

Methods in org.embl.ebi.escience.scuflworkers.wsdl that throw ProcessorCreationException

Processor

WSDLXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.wsdl that throw ProcessorCreationException

WSDLBasedProcessor(ScuflModel model, java.lang.String procName, java.lang.String wsdlLocation, java.lang.String operationName)

WSDLBasedProcessor(ScuflModel model, java.lang.String procName, java.lang.String wsdlLocation, java.lang.String operationName, javax.xml.namespace.QName portTypeName)
Construct a new processor from the given WSDL definition and operation name, delegates to superclass then instantiates ports based on WSDL inspection.