org.biomoby.client.taverna.plugin
Class MobyParseDatatypeProcessor

java.lang.Object
  org.embl.ebi.escience.scufl.Processor
      org.biomoby.client.taverna.plugin.MobyParseDatatypeProcessor

All Implemented Interfaces:

java.io.Serializable, IProcessor

public class MobyParseDatatypeProcessor
extends Processor
implements java.io.Serializable

A processor that breaks up a Moby datatype into its component parts minus all the moby wrappings.

Author:

Eddie Kawas

See Also:

Serialized Form

Field Summary

Fields inherited from interface org.embl.ebi.escience.scufl.IProcessor

ENACTOR

Constructor Summary

MobyParseDatatypeProcessor(ScuflModel model, java.lang.String workflowName, org.biomoby.shared.MobyDataType datatype, java.lang.String articleName, java.lang.String registryEndpoint)

MobyParseDatatypeProcessor(ScuflModel model, java.lang.String workflowName, java.lang.String datatypeName, java.lang.String articleName, java.lang.String registryEndpoint)

Method Summary

java.lang.String	getArticleNameUsedByService()
org.biomoby.shared.Central	getCentral()
org.biomoby.shared.MobyDataType	getDatatype()
java.lang.String	getDatatypeName()
java.util.Properties	getProperties() Get the properties for this processor for display purposes
java.lang.String	getRegistryEndpoint()
java.lang.String	getWorkflowName()
void	setArticleNameUsedByService(java.lang.String articleNameUsedByService)
void	setCentral(org.biomoby.shared.Central central)
void	setDatatype(org.biomoby.shared.MobyDataType datatype)
void	setDatatypeName(java.lang.String datatypeName)
void	setRegistryEndpoint(java.lang.String registryEndpoint)
void	setWorkflowName(java.lang.String workflowName)

Methods inherited from class org.embl.ebi.escience.scufl.Processor

addAlternate, addAnnotationTemplate, addBreakpoint, addPort, defaultAnnotationTemplates, fireModelEvent, getAlternatesArray, getAlternatesList, getAnnotationTemplates, getBackoff, getBoundInputPorts, getBoundOutputPorts, getCritical, getDefaultWorkers, getDescription, getInputPorts, getIterationStrategy, getLogLevel, getMaximumWorkers, getModel, getName, getOutputPorts, getPorts, getRealLogLevel, getResourceHost, getRetries, getRetryDelay, getTimeout, getWorkers, hasBreakpoint, isBoring, isOffline, locatePort, locatePort, removeAlternate, removeAnnotationTemplate, removePort, rmvBreakpoint, setBackoff, setBoring, setCritical, setDescription, setIterationStrategy, setLogLevel, setName, setOffline, setOnline, setRetries, setRetryDelay, setTimeout, setWorkers, toString

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MobyParseDatatypeProcessor

public MobyParseDatatypeProcessor(ScuflModel model,
                                  java.lang.String workflowName,
                                  java.lang.String datatypeName,
                                  java.lang.String articleName,
                                  java.lang.String registryEndpoint)
                           throws ProcessorCreationException,
                                  DuplicateProcessorNameException

Parameters:

model - a scufl model

workflowName - the name of this processor

datatypeName - the name of the datatype that we are processing

articleName - the article name of the datatype

registryEndpoint - the endpoint where we can find information about the datatype

Throws:

ProcessorCreationException

DuplicateProcessorNameException

MobyParseDatatypeProcessor

public MobyParseDatatypeProcessor(ScuflModel model,
                                  java.lang.String workflowName,
                                  org.biomoby.shared.MobyDataType datatype,
                                  java.lang.String articleName,
                                  java.lang.String registryEndpoint)
                           throws ProcessorCreationException,
                                  DuplicateProcessorNameException

Parameters:

model -

workflowName -

datatype -

articleName -

registryEndpoint -

Throws:

ProcessorCreationException

DuplicateProcessorNameException

Method Detail

getProperties

public java.util.Properties getProperties()

Get the properties for this processor for display purposes

Specified by:

getProperties in interface IProcessor

Specified by:

getProperties in class Processor

Returns:

a Properties instance containing all processor-specific properties, or optinally null if there are none

getArticleNameUsedByService

public java.lang.String getArticleNameUsedByService()

getCentral

public org.biomoby.shared.Central getCentral()

getDatatype

public org.biomoby.shared.MobyDataType getDatatype()

getDatatypeName

public java.lang.String getDatatypeName()

getRegistryEndpoint

public java.lang.String getRegistryEndpoint()

getWorkflowName

public java.lang.String getWorkflowName()

setArticleNameUsedByService

public void setArticleNameUsedByService(java.lang.String articleNameUsedByService)

setCentral

public void setCentral(org.biomoby.shared.Central central)

setDatatype

public void setDatatype(org.biomoby.shared.MobyDataType datatype)

setDatatypeName

public void setDatatypeName(java.lang.String datatypeName)

setRegistryEndpoint

public void setRegistryEndpoint(java.lang.String registryEndpoint)

setWorkflowName

public void setWorkflowName(java.lang.String workflowName)