net.sourceforge.taverna.scuflworkers.ncbi
Class PubMedSearchWorker

java.lang.Object
  net.sourceforge.taverna.scuflworkers.ncbi.AbstractNCBIWorker
      net.sourceforge.taverna.scuflworkers.ncbi.PubMedSearchWorker

All Implemented Interfaces:

LocalWorker

public class PubMedSearchWorker
extends AbstractNCBIWorker

This class downloads PubMed records in XML format. Since NCBI does not currently support a pure XML

Version:

$Revision: 1.2 $

Author:

mfortner

Field Summary

Fields inherited from class net.sourceforge.taverna.scuflworkers.ncbi.AbstractNCBIWorker

NEWLINE

Fields inherited from interface org.embl.ebi.escience.scuflworkers.java.LocalWorker

BINARY, BINARY_ARRAY, HTML, HTML_ARRAY, PNG_IMAGE, PNG_IMAGE_ARRAY, STRING, STRING_ARRAY, UNTYPED, UNTYPED_ARRAY

Constructor Summary

PubMedSearchWorker()

Method Summary

java.util.Map	execute(java.util.Map inputMap) This is the main method of the class.
java.lang.String[]	inputNames() This method returns an array of names of input values.
java.lang.String[]	inputTypes() This method returns an array of input mimetypes.

Methods inherited from class net.sourceforge.taverna.scuflworkers.ncbi.AbstractNCBIWorker

outputNames, outputTypes, setStreamProcessor

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PubMedSearchWorker

public PubMedSearchWorker()

Method Detail

execute

public java.util.Map execute(java.util.Map inputMap)
                      throws TaskExecutionException

Description copied from class: AbstractNCBIWorker

This is the main method of the class.

Specified by:

execute in interface LocalWorker

Specified by:

execute in class AbstractNCBIWorker

Parameters:

inputMap - A map of values to be used by the worker class.

Throws:

TaskExecutionException - thrown if there is an error during invocation of the task.

inputNames

public java.lang.String[] inputNames()

Description copied from class: AbstractNCBIWorker

This method returns an array of names of input values. These values are used as keys in the inputMap.

Specified by:

inputNames in interface LocalWorker

Overrides:

inputNames in class AbstractNCBIWorker

inputTypes

public java.lang.String[] inputTypes()

Description copied from class: AbstractNCBIWorker

This method returns an array of input mimetypes.

Specified by:

inputTypes in interface LocalWorker

Overrides:

inputTypes in class AbstractNCBIWorker