net.sourceforge.taverna.scuflworkers.ncbi
Class NCBIXMLStreamProcessor

java.lang.Object
  net.sourceforge.taverna.scuflworkers.ncbi.ReplacementStreamProcessor
      net.sourceforge.taverna.scuflworkers.ncbi.NCBIXMLStreamProcessor

All Implemented Interfaces:

StreamProcessor

Direct Known Subclasses:

NCBIXSLTStreamProcessor

public class NCBIXMLStreamProcessor
extends ReplacementStreamProcessor
implements StreamProcessor

This class cleans up NCBI pseudoXML embedded in HTML pages, and turns it into valid XML. Last edited by $Author: sowen70 $

Version:

$Revision: 1.3 $

Author:

mfortner

Constructor Summary

NCBIXMLStreamProcessor()

NCBIXMLStreamProcessor(java.util.Map outputMap, java.lang.String startTag, java.lang.String endTag, java.lang.String outputFile, java.lang.String ext)
Constructor

Method Summary

java.lang.String	getEndTag()
java.util.Map	getOutputMap()
java.lang.String	getStartTag()
java.util.Map	processStream(java.io.InputStream stream) This method processes a stream of text from a URL endpoint.
void	setEndTag(java.lang.String endTag)
void	setOutputMap(java.util.Map outputMap)
void	setStartTag(java.lang.String startTag)

Methods inherited from class net.sourceforge.taverna.scuflworkers.ncbi.ReplacementStreamProcessor

getOldText, getReplacementText, setOldText, setReplacementText

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NCBIXMLStreamProcessor

public NCBIXMLStreamProcessor()

NCBIXMLStreamProcessor

public NCBIXMLStreamProcessor(java.util.Map outputMap,
                              java.lang.String startTag,
                              java.lang.String endTag,
                              java.lang.String outputFile,
                              java.lang.String ext)

Constructor

Parameters:

filename - The output filename

Method Detail

processStream

public java.util.Map processStream(java.io.InputStream stream)
                            throws java.io.IOException

This method processes a stream of text from a URL endpoint.

Specified by:

processStream in interface StreamProcessor

Overrides:

processStream in class ReplacementStreamProcessor

Parameters:

stream -

Throws:

java.io.IOException

getEndTag

public java.lang.String getEndTag()

Returns:

Returns the endTag.

setEndTag

public void setEndTag(java.lang.String endTag)

Parameters:

endTag - The endTag to set.

getOutputMap

public java.util.Map getOutputMap()

Returns:

Returns the outputMap.

setOutputMap

public void setOutputMap(java.util.Map outputMap)

Parameters:

outputMap - The outputMap to set.

getStartTag

public java.lang.String getStartTag()

Returns:

Returns the startTag.

setStartTag

public void setStartTag(java.lang.String startTag)

Parameters:

startTag - The startTag to set.