net.sourceforge.taverna.scuflworkers.ncbi
Class EntrezGeneWorker

java.lang.Object
  net.sourceforge.taverna.scuflworkers.ncbi.AbstractNCBIWorker
      net.sourceforge.taverna.scuflworkers.ncbi.EntrezGeneWorker

All Implemented Interfaces:

LocalWorker

public class EntrezGeneWorker
extends AbstractNCBIWorker

This processor is responsible for fetching an Entrez Gene record in XML format. It can also transform the resulting XML document.

Version:

$Revision: 1.2 $

Author:

mfortner

Field Summary

Fields inherited from class net.sourceforge.taverna.scuflworkers.ncbi.AbstractNCBIWorker

NEWLINE

Fields inherited from interface org.embl.ebi.escience.scuflworkers.java.LocalWorker

BINARY, BINARY_ARRAY, HTML, HTML_ARRAY, PNG_IMAGE, PNG_IMAGE_ARRAY, STRING, STRING_ARRAY, UNTYPED, UNTYPED_ARRAY

Constructor Summary

EntrezGeneWorker()

Method Summary

java.util.Map

execute(java.util.Map inputMap) This is the main method of the class.

Methods inherited from class net.sourceforge.taverna.scuflworkers.ncbi.AbstractNCBIWorker

inputNames, inputTypes, outputNames, outputTypes, setStreamProcessor

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EntrezGeneWorker

public EntrezGeneWorker()

Method Detail

execute

public java.util.Map execute(java.util.Map inputMap)
                      throws TaskExecutionException

Description copied from class: AbstractNCBIWorker

This is the main method of the class.

Specified by:

execute in interface LocalWorker

Specified by:

execute in class AbstractNCBIWorker

Parameters:

inputMap - A map of values to be used by the worker class.

Throws:

TaskExecutionException - thrown if there is an error during invocation of the task.