net.sourceforge.taverna.scuflworkers.ncbi
Class AbstractEFetchWorker

java.lang.Object
  net.sourceforge.taverna.scuflworkers.ncbi.AbstractEFetchWorker

All Implemented Interfaces:

LocalWorker

Direct Known Subclasses:

EFetchWorker, LocusLinkWorker, NucleotideFastaWorker, NucleotideGBSeqWorker, NucleotideINSDSeqXMLWorker, NucleotideTinySeqXMLWorker, ProteinFastaWorker, ProteinGBSeqWorker, ProteinINSDSeqXMLWorker, ProteinTinySeqXMLWorker, PubMedEFetchWorker, PubMedESearchWorker

public abstract class AbstractEFetchWorker
extends java.lang.Object
implements LocalWorker

This class provides the basis for all NCBI EFetch Tasks. Last edited by $Author: sowen70 $

Version:

$Revision: 1.3 $

Author:

Mark

Field Summary

static int	GET_TRANSMITTER
static java.lang.String	NEWLINE
static int	POST_TRANSMITTER

Fields inherited from interface org.embl.ebi.escience.scuflworkers.java.LocalWorker

BINARY, BINARY_ARRAY, HTML, HTML_ARRAY, PNG_IMAGE, PNG_IMAGE_ARRAY, STRING, STRING_ARRAY, UNTYPED, UNTYPED_ARRAY

Constructor Summary

AbstractEFetchWorker()

Method Summary

abstract java.util.Map	execute(java.util.Map inputMap) Given a Map of DataThing objects as input, invoke the underlying logic of the task and return a map of DataThing objects as outputs, with the port names acting as keys in the map in both cases.
abstract java.lang.String[]	inputNames() Get an array of the names of input ports for this processor
abstract java.lang.String[]	inputTypes() Get an array of the string types for the inputs defined by the inputNames() method, these should probably use the constants defined in this interface but may use any valid Baclava data type specifier.
java.lang.String[]	outputNames() Names of the output ports
java.lang.String[]	outputTypes() Types of the output ports

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NEWLINE

public static final java.lang.String NEWLINE

GET_TRANSMITTER

public static final int GET_TRANSMITTER

See Also:

Constant Field Values

POST_TRANSMITTER

public static final int POST_TRANSMITTER

See Also:

Constant Field Values

Constructor Detail

AbstractEFetchWorker

public AbstractEFetchWorker()

Method Detail

execute

public abstract java.util.Map execute(java.util.Map inputMap)
                               throws TaskExecutionException

Description copied from interface: LocalWorker

Given a Map of DataThing objects as input, invoke the underlying logic of the task and return a map of DataThing objects as outputs, with the port names acting as keys in the map in both cases.

Specified by:

execute in interface LocalWorker

Throws:

TaskExecutionException - thrown if there is an error during invocation of the task.

See Also:

LocalWorker.execute(java.util.Map)

inputNames

public abstract java.lang.String[] inputNames()

Description copied from interface: LocalWorker

Get an array of the names of input ports for this processor

Specified by:

inputNames in interface LocalWorker

See Also:

LocalWorker.inputNames()

inputTypes

public abstract java.lang.String[] inputTypes()

Description copied from interface: LocalWorker

Get an array of the string types for the inputs defined by the inputNames() method, these should probably use the constants defined in this interface but may use any valid Baclava data type specifier.

Specified by:

inputTypes in interface LocalWorker

See Also:

LocalWorker.inputTypes()

outputNames

public java.lang.String[] outputNames()

Description copied from interface: LocalWorker

Names of the output ports

Specified by:

outputNames in interface LocalWorker

See Also:

LocalWorker.outputNames()

outputTypes

public java.lang.String[] outputTypes()

Description copied from interface: LocalWorker

Types of the output ports

Specified by:

outputTypes in interface LocalWorker

See Also:

LocalWorker.outputTypes()