Package net.sourceforge.taverna.scuflworkers.biojava

Provides BioJava-based LocalWorkers capable of sequence transcription, translation, and file parsing.

See:
Description

Class Summary

BlastParserWorker	This processor parses BLAST results and returns an XML document containing the results.
BlastParserWorkerTest	This class Last edited by $Author: sowen70 $
EMBLParserWorker	This processor parses an EMBL-based file and outputs the results in Agave XML format.
EMBLParserWorkerTest	This class tests the EMBLParserWorker by parsing a test file.
FastaWorker	This processor reads a FASTA file and returns the results as XML.
FileFormatIDWorker	This class Last edited by $Author: sowen70 $
FileFormatIDWorkerTest	This class Last edited by $Author: sowen70 $
GenBankParserWorker	This class parses genbank files and outputs the results in Agave XML format.
GenBankParserWorkerTest	This class tests the GenBanParserWorker by parsing a GenBank test file.
ReverseCompWorker	This processor takes a raw DNA sequence and returns the reverse complement of the sequence.
ReverseCompWorkerTest	This class Last edited by $Author: sowen70 $
SwissProtParserWorker	This processor parses a SwissProt file and outputs the results in Agave XML format.
SwissProtParserWorkerTest	This class tests the SwissProtParserWorker by parsing a SwissProt test file.
TranscribeWorker	This processor takes a DNA sequence and transcribes it into an RNA sequence.
TranscribeWorkerTest	This class Last edited by $Author: sowen70 $
TranslateWorker	This class translates a DNA sequence into a protein sequence.
TranslateWorkerTest	This class Last edited by $Author: sowen70 $

Package net.sourceforge.taverna.scuflworkers.biojava Description

Provides BioJava-based LocalWorkers capable of sequence transcription, translation, and file parsing.