All Classes

AboutBox AbstractArtifactFilter AbstractBufferedImageOp AbstractCellEditor AbstractConfiguration AbstractEFetchWorker AbstractNCBIWorker AbstractPerspective AbstractProcessorAction AbstractRenderer AbstractRenderer.ByJavaClass AbstractRenderer.ByMimeType AbstractRenderer.ByPattern AbstractRepository AbstractStreamProcessor AbstractStreamTransmitter AbstractTreeTableModel AddDataConstraintAction AddInputAction AddNestedWorkflowAction AddOutputAction AddParserAction AddPluginSiteFrame AdvancedModelExplorer AdvancedModelExplorerFactory AggregatingClassLoader AlternateProcessor AlternateProcessScheduled AnnotationTemplate APConfigPanel APEditor APIConsumerDefinition APIConsumerEditor APIConsumerProcessor APIConsumerProcessorFactory APIConsumerProcessorInfoBean APIConsumerScavenger APIConsumerScavengerHelper APIConsumerTask APIConsumerXMLHandler APProcessor APProcessorFactory APProcessorInfoBean APScavenger APTask APXMLHandler Artifact ArtifactDownloadDialog ArtifactFilter ArtifactFilterListener ArtifactImpl ArtifactNotFoundException ArtifactStateException ArtifactStatus AskWorker AssigningServiceClient AWTComponentRenderer BaclavaDataService BaclavaDataServiceFactory BaclavaIterator BaclavaIteratorNode Base64 Base64 Base64.InputStream Base64.InputStream Base64.OutputStream Base64.OutputStream BasicArtifact BeanshellConfigPanel BeanshellEditor BeanshellProcessor BeanshellProcessorFactory BeanshellProcessorInfoBean BeanshellScavenger BeanshellTask BeanshellXMLHandler BiomartConfigPanel BiomartEditor BiomartProcessor BiomartProcessorFactory BiomartProcessorInfoBean BiomartScavenger BiomartScavengerHelper BiomartTask BiomartXMLHandler BiomobyAction BiomobyObjectAction BiomobyObjectProcessor BiomobyObjectProcessorFactory BiomobyObjectProcessorInfoBean BioMobyObjectProcessorTest BiomobyObjectScavenger BiomobyObjectScavengerHelper BiomobyObjectTask BioMobyObjectTreeCustomRenderer BiomobyObjectXMLHandler BiomobyProcessor BiomobyProcessor BiomobyProcessorFactory BiomobyProcessorFactory BiomobyProcessorInfoBean BioMobyProcessorTest BiomobyScavenger BiomobyScavenger BiomobyScavengerAction BiomobyScavengerActionDialog BiomobyScavengerDialog BiomobyScavengerHelper BiomobyScavengerHelper BiomobyScavengerWorker BioMobyServiceTreeCustomRenderer BiomobyTask BiomobyTask BiomobyWidgetAction BiomobyXMLHandler BiomobyXMLHandler BlankScavengerTreePanel BlastParserWorker BlurredGlassPane Bootstrap BootstrapClassLoader BoundingBox BoxBlurFilter BSFConfigPanel BSFEditor BSFProcessor BSFProcessorFactory BSFProcessorInfoBean BSFScavenger BSFTask BSFXMLHandler ByteArrayToString BytesSelection CacheImpl CArrowImage ChooseWorker CollectionAsTable CollectionConstructionEvent ConcatenateFileListWorker ConcurrencyConstraint ConcurrencyConstraintCreationException ConfigureMobyServiceAction ConsoleLog ConstructingIterator CopyOfBiomobyTask CreateMobyCollection CreateMobyData CreateMobyData CreateMobySimple CrossNode CTransferableTreePath CustomPerspective CustomPerspectiveFactory DataConstraint DataConstraintCreationException DataMismatchError DataRangeColumnTask DataRangeTask DataThing DataThingAdapter DataThingFactory DataThingFactoryTest DataThingTreeFactory DataThingTreeNode DataThingTreeNodeRenderer DataThingTreeTransferHandler DataThingViewer DataThingXMLFactory DecodeBase64 DefaultScavengerTree DelimitedFileReader DependenciesPanel DependencyProcessor DependencyProcessor.ClassLoaderSharing DependencyXMLHandler DesignPerspective DotNode DotTextArea DotTextAreaFactory DotView DotViewSettings DownloadStatus DownloadStatusImpl DuplicateConcurrencyConstraintNameException DuplicateLSIDException DuplicatePortNameException DuplicateProcessorNameException EchoList EclipseRepository EditMetadataAction EFetchWorker EMBLParserWorker EmitLotsOfStrings EnactorEventMonitor EnactorEventMonitorFactory EnactorInvocation EnactorProxy EnactorStatusTableModel EnactorWorkflowTask EnactPerspective EncodeBase64 EntrezGeneWorker EntrezProteinWorker EnvVariableWorker ExcelFileReader ExtendedBSFDeclaredBean ExtendedBSFManager ExtendedJTree ExtensionFileFilter ExtractImageLinks ExtractMobyData ExtractMobyData FacetFinderRegistry FacetFinderSPI FacetFinderSPI.ColumnID FacetsTable FactorySpecFragment FailIfFalse FailIfTrue FastaWorker FileDrop FileDrop.Listener FileFilter FileFormatIDWorker FileListByExtTask FileListByRegexTask FileNameUtil FileScavenger FileStreamProcessor FileStreamProcessor FilterStringList FlattenList FlattenListEditAction Flavours FreefluoEnactorProxy FTableColumn FTableColumnModel FTableColumnModelEvent FTableColumnModelListener GenBankParserWorker GetLSID GetStreamProcessor GetStreamTransmitter GraphColours GraphSpanningTree GraphUtilities HomoloGeneWorker HTMLSummarisableProcessor Image ImageMath ImageReader ImageWriter ImportWorkflowFromFileAction ImportWorkflowFromURLAction InfernoProcessor InfernoProcessorFactory InfernoProcessorInfoBean InfernoScavenger InfernoScavengerHelper InfernoTask InfernoXMLHandler InfiniteProgressPanel InputPort InputsNotMatchingException INSDSeqXMLWorker InstanceRegistry InstanceRegistryListener IntermediateNode InvalidProfileException Invoking InvokingWithIteration IProcessor IProcessorTask IterationCompletionEvent IterationStrategy IterationStrategyEditor IterationStrategyEditorControl IterationStrategyEditorFactory IteratorNodeTests IteratorTest JavaLog JDBCBaclavaDataService JDBCStoreTest JMolRenderer JoinIterator JoinIteratorNode JTidyWorker JTreeTable JTreeTable.TreeTableTextField JxtaRepository LabelRenderer Lang LatestVersionFilter LayoutConstants LeafNode LinkingMenus Loader LocalArtifactClassLoader LocalCommand LocalRepository LocalRepository LocalServiceProcessor LocalServiceProcessorFactory LocalServiceProcessorInfoBean LocalServiceScavenger LocalServiceTask LocalServiceXMLHandler LocalWorker LocalWorkerRegistry LocalWorkerWithPorts LockStepIterator LockStepIteratorNode LocusLinkWorker Log Log4JConfiguration Log4jLog LogInterface LogInterface.Priority LSIDProvider LSIDProvider.NamespaceEnumeration MalformedNameException MarqueeHandler MinorScuflModelEvent MissingSoaplabException MobyObjectTreeNode MobyPanel MobyParseDatatypeProcessor MobyParseDatatypeProcessorFactory MobyParseDatatypeProcessorInfoBean MobyParseDatatypeScavenger MobyParseDatatypeTask MobyParseDatatypeXMLHandler MobyServiceTreeNode ModelMap ModelMap.ModelChangeListener ModelObjectAction ModelSpanningTree MyGridConfiguration NCBIXMLStreamProcessor NCBIXSLTStreamProcessor NestedWorkflowCompletionEvent NestedWorkflowCreationEvent NestedWorkflowFailureEvent NoContextMenuFoundException NodeColouringRenderer NoMetadataFoundException NoSuchLSIDException NotificationProcessor NotificationProcessorFactory NotificationProcessorInfoBean NotificationProcessorTask NotificationScavenger NotificationXMLHandler NucleotideFastaWorker NucleotideGBSeqWorker NucleotideINSDSeqXMLWorker NucleotideTinySeqXMLWorker NucleotideXMLWorker OfflineToggleModel OMIMWorker OpenWorkflowFromFileAction OpenWorkflowFromURLAction OutputPort OverlayListener PadNumber ParseMobyXML PasswordInput PerspectiveRegistry PerspectiveSPI Plugin PluginEvent PluginListCellRenderer PluginListener PluginListModel PluginManager PluginManagerEvent PluginManagerFrame PluginManagerListener PluginRepositoryListener PluginSite PluginSiteFrame PollingPropertiesEditor PopupThread Port PortCreationException PortSemanticMarkup PortTask PositionLayout PostStreamProcessor PostStreamTransmitter PostWorker ProcessCancelled ProcessComplete ProcessCompletionEvent ProcessEvent ProcessFailureEvent Processor ProcessorActionRegistry ProcessorActionSPI ProcessorCreationException ProcessorEditor ProcessorFactory ProcessorHelper ProcessorInfoBean ProcessorInfoBeanHelper ProcessorRegistry ProcessorSpecFragment ProcessorTask ProcessorTaskWorker ProcessorViewSPI ProcessPaused ProcessScheduled Profile ProfileFactory ProfileHandler ProfileListSelector ProfileSelector ProfileUpdateHandler ProfileVersion ProfileVersionCellRenderer ProfileVersionListFrame ProfileVersionListModel ProfileVersions PropertyFetcher PropertyFetcher.Closure PropertySheet PropertySheet.Editor ProteinFastaWorker ProteinGBSeqWorker ProteinINSDSeqXMLWorker ProteinTinySeqXMLWorker ProxyConfiguration PublicationException PublishDialog PubMedEFetchWorker PubMedESearchWorker PubMedSearchWorker Raven RavenException RavenProperties RDFGeneratorProcessor RDFGeneratorProcessorFactory RDFGeneratorProcessorInfoBean RDFGeneratorScavenger RDFGeneratorScavengerHelper RDFGeneratorTask RDFGeneratorXMLHandler RDFSClassHolder RDFSParser RegexFileSelector RegexFileWorker RegexScanner RegexScanner.PatternEditor RegexScanner.Scanner RegistryListener RegularExpressionStringList RemoteSOAPStore RemoveAction RenameAction RendererException RendererRegistry RendererSPI ReplacementStreamProcessor ReplaceTextFileProcessor Repositories Repository Repository RepositoryForm RepositoryListener RepositoryManager ResetAction ResultItemPanel ResultMapSaveRegistry ResultMapSaveSPI ResultSource ResultTable ResultTable.TableSelectionListener ResultTableCell ResultTableCellCollection ResultTableColumn ResultTableModel ResultTablePanel ResultTableUI ResultThing ResumableEnactorProxy ResumableIterator RetrieveWsdlThread ReverseCompWorker RotateImageWorker RowLayout RservConfigPanel RservEditor RservInputPort RservProcessor RservProcessorFactory RservProcessorInfoBean RservScavenger RservTask RservXMLHandler RshellConfigPanel RshellConnection RshellConnectionManager RshellConnectionSettings RshellEditor RshellFileFilter RshellInputPort RshellOutputPort RshellPortTypes RshellPortTypes.SymanticTypes RshellProcessor RshellProcessorFactory RshellProcessorInfoBean RshellScavenger RshellTask RshellXMLHandler RunWorkflowAction SaveAsDataThingDocument SaveAsExcel SaveToFileSystem SaveToFileSystemMappingLSIDs SaveWorkflowAction ScaleImageWorker Scavenger ScavengerActionRegistry ScavengerActionSPI ScavengerCreationException ScavengerHelper ScavengerHelperRegistry ScavengerHelperThreadPool ScavengerRegistry Scavengers ScavengerTree ScavengerTreePanel ScavengerTreePanelFactory ScavengerTreePopupHandler ScavengerTreeRenderer ScuflContextMenuAware ScuflContextMenuFactory ScuflDiagramPanel ScuflDiagramPanelFactory ScuflException ScuflGraphAttributeChange ScuflGraphModel ScuflGraphModelChange ScuflModel ScuflModelAction ScuflModelActionRegistry ScuflModelActionSPI ScuflModelAddEvent ScuflModelEvent ScuflModelEventListener ScuflModelEventPrinter ScuflModelExplorer ScuflModelExplorerDragHandler ScuflModelExplorerPopupHandler ScuflModelExplorerRenderer ScuflModelReconciler ScuflModelRemoveEvent ScuflModelRenameEvent ScuflModelSet ScuflModelSet.ScuflModelSetListener ScuflModelTreeTable ScuflModelTreeTableContrib ScuflSemanticMarkupEditor ScuflSVGDiagram ScuflSVGDiagramFactory ScuflWorkflowProcessor ScuflWorkflowProcessorFactory SelectFileWorker SelectWorker Self SemanticMarkup SemanticMarkupViewSPI SendEmail SeqVistaRenderer ServiceError ServiceFailure SetBoringAction SetDefaultValueAction SetOnlineException SFTPRepository ShadedLabel SimpleFile SimpleUserContext SliceList SliceListEditAction SNPWorker Soap SoaplabCategory SoaplabDescriberPanel SoaplabProcessor SoaplabProcessorCreation SoaplabProcessorFactory SoaplabProcessorInfoBean SoaplabScavenger SoaplabScavengerAgent SoaplabScavengerHelper SoaplabTask SoaplabXMLHandler SpecFragment SpecFragmentTransferable SpiRegistry SplashScreen SplitByRegex SQLQueryWorker SQLUpdateWorker StreamCopier StreamDevourer StreamProcessor StreamTransmitter StringConcat StringConstantEditor StringConstantProcessor StringConstantProcessorFactory StringConstantProcessorInfoBean StringConstantScavenger StringConstantTask StringConstantXMLHandler StringListMerge StringSetDifference StringSetIntersection StringSetUnion StringStripDuplicates StringXMLEmitter StupidLSIDProvider SVGRenderer SwissProtParserWorker TalismanProcessor TalismanProcessorCreation TalismanProcessorFactory TalismanProcessorInfoBean TalismanScavenger TalismanScavengerHelper TalismanTask TalismanXMLHandler TaskExecutionException TavernaBinaryWorkflowSubmission TavernaBootstrapLocation TavernaIcons TavernaPluginSite TavernaSPIRegistry TavernaStringifiedWorkflowSubmission TellWorker TemplateEditor TemplateEditorFactory TestAlwaysFailingProcessor TestSometimesFails Text TextFileReader TextFileWriter TextHtml TextRtf TextTavernaWebUrl TextTavernaWebUrlFetcher TextXGraphviz TextXml TimeoutExceeded TinySeqXMLWorker ToString TranscribeWorker TransferableDataThing TransformDataThing TranslateWorker TransmitterException TreeModelView TreeTableModel TreeTableModelAdapter TreeTableModelView UIComponentFactorySPI UIComponentSPI UIUtils UIUtils.FrameCreator UnknownPortException UnknownProcessorException UnknownWorkflowInstanceException UnsetBoringAction UpdatesAvailableIcon URLBasedScavenger UserChangedDataEvent UserContext UUIDLSIDProvider VelocityFileWriter VirtualNode WaitingToRetry WarnWorker WebDAVRepository WebImageFetcher WebPageFetcher WebScavenger WebScavengerHelper WebScavengerHelperImpl Workbench WorkbenchPerspectives WorkbenchZBasePane WorkflowChanges WorkflowCompletionEvent WorkflowCreationEvent WorkflowDescription WorkflowDestroyedEvent WorkflowEdgeRenderer WorkflowEditor WorkflowEditProcessorAction WorkflowEventAdapter WorkflowEventDispatcher WorkflowEventListener WorkflowEventListenerRegistry WorkflowFailureEvent WorkflowInputMapBuilder WorkflowInputPanel WorkflowInputPanelFactory WorkflowInstance WorkflowInstanceContainer WorkflowInstanceContainerFactory WorkflowInstanceEvent WorkflowInstanceImpl WorkflowInstanceSetViewSPI WorkflowLauncher WorkflowLauncherWrapper WorkflowModelViewSPI WorkflowPerspective WorkflowProcessor WorkflowProcessorFactory WorkflowProcessorInfoBean WorkflowScavenger WorkflowScavengerHelper WorkflowSubmissionException WorkflowSubmitException WorkflowSummaryAsHTML WorkflowTask WorkflowToBeDestroyedEvent WorkflowXMLHandler WSDLBasedProcessor WSDLBasedProcessorFactory WSDLBasedScavenger WSDLInvocationTask WSDLProcessorInfoBean WSDLScavengerHelper WSDLXMLHandler XMLExtensible XMLHandler XMLInputSplitter XMLOutputSplitter XMLSplittableInputPort XMLSplittableOutputPort XMLSplitterScuflContextMenuFactory XMLTree XmlUtil XMLUtilities XPathFileSelector XPathTextWorker XPathWorker XQueryWorker XScufl XScufl2Dot XScuflFormatException XScuflParser XScuflTextArea XScuflTextAreaFactory XScuflTree XScuflTreeFactory XScuflView XSLTStreamProcessor XSLTWorker ZBasePane ZBlankComponent ZIcons ZPane ZRavenComponent ZSplitPane ZTabbedPane ZTreeNode