SoapLab and its recent improvement SoapLab2 provide mechanisms for taking pre-existing command line tools and allowing them to be accessed as services over the internet. Publications about soaplab paper(s) about soaplab Presentations about soaplab presentation(s) about soaplab

The default list for WSDL, Soaplab, Biomart and Biomoby services are defined in the mygrid.properties file. The settings to change are: taverna.defaultsoaplab - Soaplab services taverna.defaultwsdl - WSDL services taverna.defaultbiomoby - Biomoby services taverna.defaultmartregistry - Biomart registry locations

There are several ways to achieve this. The main questions are what you have already and what you want to do. Beanshell One popular solution for small shims (modify output X slightly so it is in format Y) is to use the Beanshell processor. See the manual about how to use the Beanshell. Normally it involves you [...]

Taverna can use many kinds of service, so there are many ways of producing services. If you are a biologist/bioinformatician with many legacy command-line applications and you want to wrap them as web services, we recommend Soaplab Soaplab is based on Perl. If you have more experience with Java, you might want to create services using Apache [...]

Normally, web services don’t need to be wrapped or prepared in any way to be used by Taverna. If your web service is exposed as SOAP and described with WSDL, simply right click on Available Processors and select Add new WSDL scavanger, providing the URL to your WSDL. For example, if your services are provided using [...]