<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/TAVERNA/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>getTRNA</serviceName>
		<organisation >
			<organisationName>Virginia Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://pathport.bioinformatics.vt.edu:6565/axis/services/trnascan</locationURL>
		<interfaceWSDL>http://www.vbi.vt.edu/~pathport/services/wsdls/trnascan.wsdl</interfaceWSDL>
		<serviceDescriptionText>Identifies transfer RNA genes in genomic DNA or RNA sequence. It detects tRNA by looking for short, well conserved intragenic promoter sequences found in the TPC and D arm regions of prototypic tRNAs. The results are returned using a subset of dasML format.</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>getTRNA</operationName>
				<operationSpec>&lt;s:arbitrarywsdl xmlns:s=&quot;http://org.embl.ebi.escience/xscufl/0.1alpha&quot;&gt;&lt;s:wsdl&gt;http://www.vbi.vt.edu/~pathport/services/wsdls/trnascan.wsdl&lt;/s:wsdl&gt;&lt;s:operation&gt;getTRNA&lt;/s:operation&gt;&lt;/s:arbitrarywsdl&gt;</operationSpec>
				<operationDescriptionText>Identifies transfer RNA genes in genomic DNA or RNA sequence. It detects tRNA by looking for short, well conservedintragenic promoter sequences found in the TPC and D arm regions of prototypic tRNAs. The results are returnedusing a subset of dasML format.</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>in0:sequence_target</parameterName>
						<messageName>getTRNARequest</messageName>
						<parameterDescription>Specify your input sequence: url, sequence string or sequence file attachment in fasta format. The service can only handle one input sequence per request.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#nucleotide_sequence</semanticType>
						<parameterFormat>http://www.mygrid.org.uk/ontology#fasta_format</parameterFormat>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in1:mode</parameterName>
						<messageName>getTRNARequest</messageName>
						<parameterDescription>Specify organism type search mode. Select one of the following options: Bacterial tRNAs |Eukaryotic tRNAs |Archaeal tRNAs |Mitochondrial/Chloroplast tRNAs |General tRNAs</parameterDescription>
						<defaultValue>Eukaryotic tRNAs</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>getTRNAReturn</parameterName>
						<messageName>getTRNAResponse</messageName>
						<parameterDescription>Returns the tRNA prediction info in xml format</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#gene_prediction_report</semanticType>
						<transportDataType>XMLString</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#predicting</operationTask>
				<operationMethod>http://www.mygrid.org.uk/ontology#gene_prediction_algorithm</operationMethod>
			</serviceOperation>

		</operations>

		<serviceType>WSDL service</serviceType>
	</serviceDescription>

</serviceDescriptions>
