get5SrRNA Virginia Bioinformatics Institute http://ppdev.bioinformatics.vt.edu:6565/axis/services/rrnascan http://www.vbi.vt.edu/~pathport/services/wsdls/rrnascan.wsdl Identifies Ribosomal RNA genes in genomic DNA or RNA sequence by building matrices/profiles from multiple Ribosomal RNA sequence alignments, and then finds matches between concensus sequence and query sequences. The results are returned using a subset of dasML format. get5SrRNA <s:arbitrarywsdl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:wsdl>http://www.vbi.vt.edu/~pathport/services/wsdls/rrnascan.wsdl</s:wsdl><s:operation>get5SrRNA</s:operation></s:arbitrarywsdl> Identifies Ribosomal RNA genes in genomic DNA or RNA sequence by building matrices/profiles from multiple Ribosomal RNA sequence alignments, and then findsmatches between concensus sequence and query sequences. The results are returned using a subset of dasML format. in0:sequence_target get5SrRNARequest User input sequence: url, sequence string or sequence file attachment in fasta format. false http://www.mygrid.org.uk/ontology#nucleotide_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in1:species get5SrRNARequest Organism type. One of the following options: Eubacteria |Archeaa |Eukaryota Eubacteria false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in2:gap_penalty get5SrRNARequest The score taken away when a gap is created. For example 16 16 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in3:gap_length get5SrRNARequest The gap length or gap extension. For example 4 4 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter get5SrRNAReturn get5SrRNAResponse Returns the 5SrRNA prediction info in xml format false http://www.mygrid.org.uk/ontology#gene_prediction_report XMLString http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter http://www.mygrid.org.uk/ontology#predicting http://www.mygrid.org.uk/ontology#gene_prediction_algorithm WSDL service