terablastx Virginia Bioinformatics Institute http://pathport.bioinformatics.vt.edu:6565/axis/services/timelogicblast http://www.vbi.vt.edu/~pathport/services/wsdls/beta/timelogicblast.wsdl Invokes TeraBlast version of Blastx, nucleic query vs protein database, using Tera_Blastp algorithm. terablastx <s:arbitrarywsdl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:wsdl>http://www.vbi.vt.edu/~pathport/services/wsdls/beta/timelogicblast.wsdl</s:wsdl><s:operation>terablastx</s:operation></s:arbitrarywsdl> Invokes TeraBlast version of Blastx, nucleic query vs protein database, using Tera_Blastp algorithm. in7:threshold terablastxRequest Threshold. Specifies the minimum criteria that search results must meet. For example 0.01 0.01 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in12:matrix terablastxRequest Specify matrix name. Select one of the following: blosum62 | bl62est | blo62est | blosm100 | blosum30 | blosum35 | blosum40 | blosum45 | blosum50 | blosum55 | blosum60 | blosum65 | blosum70 | blosum75 | blosum80 | blosum85 | blosum90 | bob62 | dayhoff | identity | match | mpsrchdx | mpsrchnn | mpsrchqx | mpsrchxx | nucpatnn | nucpatnx | nucpatxn | nucpatxx | optima | pam10 | pam100 | pam150 | pam20 | pam200 | pam250 | pam30 | pam300 | pam350 | pam40 | pam400 | pam450 | pam50 | pam500 | pam60 | pam70 | pam80 | pam90 | ricke2 | codon blosum62 false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in4:wordsize terablastxRequest Word size. For example 3 3 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in1:dbList terablastxRequest Blast database list. Select one of the following database: NCBI nr (CCF) | NCBI alu.a (CCF) | NCBI drosoph.aa (CCF) | NCBI ecoli.aa (CCF) | NCBI env_nr (CCF) | NCBI igSeqProt (CCF) | NCBI mito.aa (CCF) | NCBI month.aa (CCF) | NCBI pataa (CCF) | NCBI pdbaa (CCF) | NCBI yeast.aa (CCF) NCBI nr (CCF) false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in6:significant terablastxRequest Indicates how statistical significance is to be calculated. Select one of the 3 possible values: "EVALUE" | "PSCORE" | "ERATING" EVALUE false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in5:gappedalign terablastxRequest Gapped Alignments Method. Select one of the following option: "T (Smith-Waterman)" | "F (Ungapped)" | "DASW (Double-Affine SW)" | "SGSW (Semi-Global SW)" | "BANDED (Banded SW)" BANDED (Banded SW) false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in10:openpenalty terablastxRequest The cost to an open penalty. For example 11 11 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in11:extendpenalty terablastxRequest The cost to an extend penalty. For example 1 1 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in0:query_sequence terablastxRequest In addition to Nucleotide sequence in fasta format or without any format, the query sequence can also be files that contain lists of: '1.genbankids or accession' '2.fasta files with multiple sequences' false http://www.mygrid.org.uk/ontology#nucleotide_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in2:output_format terablastxRequest Specify output format. 3 possible values: XML | Plain Text | NCBI Text | XML false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in8:maxscore terablastxRequest Maximum scores. For example 30 30 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in3:queryfilter terablastxRequest Select "Yes" to filter your query or "No" to avoid this process. Yes false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in9:maxalign terablastxRequest Maximum alignments. For example 20 20 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter terablastxReturn terablastxResponse Return a list of sequence with best scores in specified format. false http://www.mygrid.org.uk/ontology#BLAST_report String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter http://www.mygrid.org.uk/ontology#gapped_aligning http://www.mygrid.org.uk/ontology#BLAST_Basic_Local_Alignment_Search_Tool WSDL service