terablastn Virginia Bioinformatics Institute http://pathport.bioinformatics.vt.edu:6565/axis/services/timelogicblast http://www.vbi.vt.edu/~pathport/services/wsdls/beta/timelogicblast.wsdl Perform nucleotide-nucleotide Blast search using Tera-Blast algorithm suite. It is running on the decypher system. terablastn <s:arbitrarywsdl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:wsdl>http://www.vbi.vt.edu/~pathport/services/wsdls/beta/timelogicblast.wsdl</s:wsdl><s:operation>terablastn</s:operation></s:arbitrarywsdl> Perform nucleotide-nucleotide Blast search using Tera-Blast algorithm suite. It is running on the decypher system. in7:significance terablastnRequest Indicates how statistical significance is to be calculated. Select one of the 3 possible values: "EVALUE" | "PSCORE" | "ERATING" EVALUE false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in12:nucleicmismatch terablastnRequest Cost to a nucleic mismatch. For example -3 -3 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in4:querysearch terablastnRequest Select one of the following 3 options for your query sequence: "Use both the Direct and Complement Strands" | "Use the Direct Strand" | "Use the Complement Strand" Use both the Direct and Complement Strands false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in1:dbList terablastnRequest Blast database list. Select one of the following database: NCBI nt (CCF) | NCBI alu.n (CCF) | NCBI drosoph.nt (CCF) | NCBI ecoli.nt (CCF) | NCBI env_nt (CCF) | NCBI est_human (CCF) | NCBI est_mouse (CCF) | NCBI gss (CCF) | NCBI human_genomic (CCF) | NCBI igSeqNt (CCF) | NCBI mito.nt (CCF) | NCBI month.est_human (CCF) | NCBI month.est_mouse (CCF) | NCBI month.est_others (CCF) | NCBI month.gss (CCF) | NCBI month.htgs (CCF) | NCBI month.nt (CCF) | NCBI other_genomic (CCF) | NCBI patnt (CCF) | NCBI pdbnt (CCF) | NCBI sts (CCF) | NCBI vector (CCF) | NCBI yeast.nt (CCF) NCBI nt (CCF) false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in6:gappedalign terablastnRequest Gapped Alignments Method. Select one of the following option: "T (Smith-Waterman)" | "F (Ungapped)" | "DASW (Double-Affine SW)" | "SGSW (Semi-Global SW)" | "BANDED (Banded SW)" BANDED (Banded SW) false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in5:wordsize terablastnRequest Word size. For example 11 11 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in10:maxalign terablastnRequest Maximum alignments. For example 20 20 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in11:nucleicmatch terablastnRequest Cost to a nucleic match. For example 1 1 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in14:extendpenalty terablastnRequest The cost to an extend penalty. For example 2 2 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in0:query_sequence terablastnRequest In addition to Nucleotide sequence in fasta format or without any format, the query sequence can also be files that contain lists of: '1.genbankids or accession' '2.fasta files with multiple sequences' false http://www.mygrid.org.uk/ontology#nucleotide_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in2:output_format terablastnRequest Specify output format. 3 possible values: XML | Plain Text | NCBI Text | XML false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in8:threshold terablastnRequest Threshold. Specifies the minimum criteria that search results must meet. For example 0.01 0.01 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in13:openpenalty terablastnRequest The cost to an open penalty. For example 5 5 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in3:queryfilter terablastnRequest Select "Yes" to filter your query or "No" to avoid this process. false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in9:maxscore terablastnRequest Maximum scores. For example 30 30 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter terablastnReturn terablastnResponse Return a list of sequence with best scores in specified format. false http://www.mygrid.org.uk/ontology#BLAST_report String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter http://www.mygrid.org.uk/ontology#gapped_aligning http://www.mygrid.org.uk/ontology#BLAST_Basic_Local_Alignment_Search_Tool WSDL service