protein_Alignment Virginia Bioinformatics Institute http://pathport.bioinformatics.vt.edu:6565/axis/services/stretcher http://www.vbi.vt.edu/~pathport/services/wsdls/beta/stretcher.wsdl Finds the best global alignment between two protein sequences. protein_Alignment <s:arbitrarywsdl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:wsdl>http://www.vbi.vt.edu/~pathport/services/wsdls/beta/stretcher.wsdl</s:wsdl><s:operation>protein_Alignment</s:operation></s:arbitrarywsdl> Finds the best global alignment between two protein sequences in0:query_sequence1 protein_AlignmentRequest Protein sequence in fasta format or the file name (URL) containing protein sequence, or sequence file attachment. false http://www.mygrid.org.uk/ontology#protein_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in1:name1 protein_AlignmentRequest Specify your query sequence1 name or ID. false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in2:query_sequence2 protein_AlignmentRequest Protein sequence in fasta format or the file name (URL) containing protein sequence, or sequence file attachment. false http://www.mygrid.org.uk/ontology#protein_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in3:name2 protein_AlignmentRequest Specify your query sequence2 name or ID. false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in4:gapPenalty protein_AlignmentRequest Gap penalty value. For example 12 12 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in5:extPenalty protein_AlignmentRequest Extension penalty value. For example 2 2 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in6:matrix protein_AlignmentRequest Scoring matrix. Select one of the following option: EBLOSUM30 |EBLOSUM35 |EBLOSUM40 |EBLOSUM45 |EBLOSUM50 |EBLOSUM55 |EBLOSUM60 |EBLOSUM62 |EBLOSUM65 |EBLOSUM70 |EBLOSUM75 |EBLOSUM80 |EBLOSUM85 |EBLOSUM90 |EBLOSUMN |EPAM10 |EPAM20 |EPAM30 |EPAM40 |EPAM50 |EPAM60 |EPAM70 |EPAM80 |EPAM90 |EPAM100 |EPAM110 |EPAM120 |EPAM130 |EPAM140 |EPAM150 |EPAM160 |EPAM170 |EPAM180 |EPAM190 |EPAM200 |EPAM210 |EPAM220 |EPAM230 |EPAM240 |EPAM250 |EPAM260 |EPAM270 |EPAM280 |EPAM290 |EPAM300 |EPAM310 |EPAM320 |EPAM330 |EPAM340 |EPAM350 |EPAM360 |EPAM370 |EPAM380 |EPAM390 |EPAM400 |EPAM410 |EPAM420 |EPAM430 |EPAM440 |EPAM450 |EPAM460 |EPAM470 |EPAM480 |EPAM490 |EPAM500 false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter protein_AlignmentReturn protein_AlignmentResponse Return the pairwise alignment result in MSAML format. false http://www.mygrid.org.uk/ontology#pairwise_sequence_alignment_report String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter http://www.mygrid.org.uk/ontology#pairwise_global_aligning WSDL service