nucleotide_Alignment Virginia Bioinformatics Institute http://pathport.bioinformatics.vt.edu:6565/axis/services/stretcher http://www.vbi.vt.edu/~pathport/services/wsdls/beta/stretcher.wsdl Finds the best global alignment between two nucleotide sequences. nucleotide_Alignment <s:arbitrarywsdl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:wsdl>http://www.vbi.vt.edu/~pathport/services/wsdls/beta/stretcher.wsdl</s:wsdl><s:operation>nucleotide_Alignment</s:operation></s:arbitrarywsdl> Finds the best global alignment between two nucleotide sequences in0:query_sequence1 nucleotide_AlignmentRequest Nucleotide sequence in fasta format or the file name (URL) containing nucleotide sequence, or sequence file attachment. false http://www.mygrid.org.uk/ontology#nucleotide_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in1:name1 nucleotide_AlignmentRequest Specify your query sequence1 name or ID. false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in2:query_sequence2 nucleotide_AlignmentRequest Nucleotide sequence in fasta format or the file name (URL) containing nucleotide sequence, or sequence file attachment. false http://www.mygrid.org.uk/ontology#nucleotide_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in3:name2 nucleotide_AlignmentRequest Specify your query sequence2 name or ID. false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in4:gapPenalty nucleotide_AlignmentRequest Gap penalty value. For example 16 16 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in5:extPenalty nucleotide_AlignmentRequest Gap length penalty. For example 4 4 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in6:matrix nucleotide_AlignmentRequest Scoring matrix. Select one of the following option:EDNAFULL |EDNAMAT |ENUC.4.2 |ENUC.4.4 EDNAFULL false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter nucleotide_AlignmentReturn nucleotide_AlignmentResponse Return the pairwise alignment result in MSAML format. false http://www.mygrid.org.uk/ontology#pairwise_sequence_alignment_report String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter http://www.mygrid.org.uk/ontology#pairwise_global_aligning WSDL service