swna Virginia Bioinformatics Institute http://pathport.bioinformatics.vt.edu:6565/axis/services/timelogicsmithwaterman http://staff.vbi.vt.edu/pathport/services/wsdls/beta/timelogicsmithwaterman.wsdl DeCypher Smith-Waterman Search Nucleotide Query vs. Protein Database swna <s:arbitrarywsdl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:wsdl>http://staff.vbi.vt.edu/pathport/services/wsdls/beta/timelogicsmithwaterman.wsdl</s:wsdl><s:operation>swna</s:operation></s:arbitrarywsdl> DeCypher Smith-Waterman Search Nucleotide Query vs. Protein Database in7:maxscore swnaRequest Maximum scores. For example 30 30 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in12:da_gap_length swnaRequest Minimum length of a gap where the first gap penalty is applied.For example 50 50 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in4:queryfilter swnaRequest Select"Yes"to filter your query or"No"to avoid this process. Yes false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in1:dbList swnaRequest Blast database list. Select one of the following database: NCBI nr (CCF) |NCBI alu.a (CCF) |NCBI drosoph.aa (CCF) |NCBI ecoli.aa (CCF) |NCBI env_nr (CCF) |NCBI igSeqProt (CCF) |NCBI mito.aa (CCF) |NCBI month.aa (CCF) |NCBI pataa (CCF) |NCBI pdbaa (CCF) |NCBI swissprot (DDF) |NCBI yeast.aa (CCF) NCBI nr (CCF) false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in6:threshold swnaRequest Specify the minimum criteria that search results must meet. For example 0.01 0.01 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in5:significance swnaRequest Indicates how statistical significance is to be calculated. Select one of the 4 possible values: EVALUE |PSCORE |ZSCORE |ERATING EVALUE false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in10:extendpenalty swnaRequest Extend penalty. For example 2 2 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in11:matrix swnaRequest Weight Matrix Name. Select one of the following option:bl62est |blo62est |blosm100 |blosum30 |blosum35 |blosum40 |blosum45 |blosum50 |blosum55 |blosum60 |blosum62 |blosum65 |blosum70 |blosum75 |blosum80 |blosum85 |blosum90 |bob62 |dayhoff |identity |match |mpsrchdx |mpsrchnn |mpsrchqx |mpsrchxx |nucpatnn |nucpatnx |nucpatxn |nucpatxx |optima |pam10 |pam100 |pam150 |pam20 | bl62est false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in0:query_sequence swnaRequest In addition to Nucleotide sequence in fasta format or without any format, the query sequence can also be files that contain lists of:'1.genbankids or accession''2.fasta files with multiple sequences' false http://www.mygrid.org.uk/ontology#nucleotide_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in2:output_format swnaRequest Specify output format. Select one of the 3 possible values:XML |Plain Text |NCBI Text | XML false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in8:maxalign swnaRequest Maximum alignment. For example 20 20 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in13:second_extend_penalty swnaRequest Penalty for extending a gap as the gap grows larger than the DA gap length. 0 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in3:algorithm_variation swnaRequest Algorithm variation. Select one of the 3 possible algorithm variation: Local (Standard) |Semi-Global |Double Affine | Local (Standard) false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in9:openpenalty swnaRequest Open penalty. For example 12 12 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter swnaReturn swnaResponse Return a list of sequence with best scores in specified format. false http://www.mygrid.org.uk/ontology#smith_waterman_similarity_report String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter http://www.mygrid.org.uk/ontology#pairwise_local_aligning http://www.mygrid.org.uk/ontology#Smith-Waterman_sequence_alignment_algorithm WSDL service