<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/TAVERNA/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>getPcaAnalysis</serviceName>
		<organisation >
			<organisationName>Virginia Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://valar.bioinformatics.vt.edu:6565/axis/services/rpca</locationURL>
		<interfaceWSDL>http://www.vbi.vt.edu/~pathport/services/wsdls/rpca.wsdl</interfaceWSDL>
		<serviceDescriptionText>Wraps the native Principle Component Analysis program in R package for cluster analysis. The result of clustering is in MADM (microarray data minning)format.</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>getPcaAnalysis</operationName>
				<operationSpec>&lt;s:arbitrarywsdl xmlns:s=&quot;http://org.embl.ebi.escience/xscufl/0.1alpha&quot;&gt;&lt;s:wsdl&gt;http://www.vbi.vt.edu/~pathport/services/wsdls/rpca.wsdl&lt;/s:wsdl&gt;&lt;s:operation&gt;getPcaAnalysis&lt;/s:operation&gt;&lt;/s:arbitrarywsdl&gt;</operationSpec>
				<operationDescriptionText>Wraps the native Principle Component Analysis program in R package for cluster analysis. The result of clustering is in MADM (microarray data minning)format.</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>in0:input_data</parameterName>
						<messageName>getPcaAnalysisRequest</messageName>
						<parameterDescription>Input data or URL of your input data. An example of data: http://staff.vbi.vt.edu/pathport/services/wsdls/testtab.txtIn this example the URL or the data can be used as input.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in1:pca_options</parameterName>
						<messageName>getPcaAnalysisRequest</messageName>
						<parameterDescription>Perform principle component analysis on genes or samples or both. Select one of the following 3 options: PCA on row (genes) |PCA on column (samples) |PCA on both row (genes) and column (samples) |</parameterDescription>
						<defaultValue>PCA on both row (genes) and column (samples)</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>getPcaAnalysisReturn</parameterName>
						<messageName>getPcaAnalysisResponse</messageName>
						<parameterDescription>Return clustered data in MADM format.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#grouping</operationTask>
			</serviceOperation>

		</operations>

		<serviceType>WSDL service</serviceType>
	</serviceDescription>

</serviceDescriptions>
