<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/TAVERNA/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>getRankgene</serviceName>
		<organisation >
			<organisationName>Virginia Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>https://ppdev.bioinformatics.vt.edu:7575/axis/services/rankgene</locationURL>
		<interfaceWSDL>http://www.vbi.vt.edu/~pathport/services/wsdls/rankgene.wsdl</interfaceWSDL>
		<serviceDescriptionText>Analyzes gene expression data, feature selection and ranking genes based on the predictive power of each gene to classifysamples into functional or disease categories.</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>getRankgene</operationName>
				<operationSpec>&lt;s:arbitrarywsdl xmlns:s=&quot;http://org.embl.ebi.escience/xscufl/0.1alpha&quot;&gt;&lt;s:wsdl&gt;http://www.vbi.vt.edu/~pathport/services/wsdls/rankgene.wsdl&lt;/s:wsdl&gt;&lt;s:operation&gt;getRankgene&lt;/s:operation&gt;&lt;/s:arbitrarywsdl&gt;</operationSpec>
				<operationDescriptionText>Analyzes gene expression data, feature selection and ranking genes based on the predictive power of each gene to classifysamples into functional or disease categories.</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>in0:key</parameterName>
						<messageName>getRankgeneRequest</messageName>
						<parameterDescription>Key to authenticate user. user name for example</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in1:expdata</parameterName>
						<messageName>getRankgeneRequest</messageName>
						<parameterDescription>A dataframe or matrix of input expression data.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in2:classdata</parameterName>
						<messageName>getRankgeneRequest</messageName>
						<parameterDescription>A data frame or matrix of input class labels.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in3:measure</parameterName>
						<messageName>getRankgeneRequest</messageName>
						<parameterDescription>Measure method to rank genes. Select one of the following value: One dimensional SVM |Information gain |Twoing rule |Gini index |Sum minority |Max minority |Sum of variances |t-statistic</parameterDescription>
						<defaultValue>One dimensional SVM</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in4:genenumber</parameterName>
						<messageName>getRankgeneRequest</messageName>
						<parameterDescription>The number of genes to list in the output results. For example 100</parameterDescription>
						<defaultValue>100</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in5:dsdescription</parameterName>
						<messageName>getRankgeneRequest</messageName>
						<parameterDescription>data source description. For example&apos;Rankgene for microarray data&apos;</parameterDescription>
						<defaultValue>Rankgene for microarray data</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in6:isTimeSeries</parameterName>
						<messageName>getRankgeneRequest</messageName>
						<parameterDescription>Value to determine data is TimeSeries. select&apos;YES&apos;or&apos;NO&apos;</parameterDescription>
						<defaultValue>NO</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>getRankgeneReturn</parameterName>
						<messageName>getRankgeneResponse</messageName>
						<parameterDescription>Return genes most predictive of the sample classes based on the measure.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#gene_prediction_report</semanticType>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#predicting</operationTask>
				<operationMethod>http://www.mygrid.org.uk/ontology#gene_prediction_algorithm</operationMethod>
			</serviceOperation>

		</operations>

		<serviceType>WSDL service</serviceType>
	</serviceDescription>

</serviceDescriptions>
