<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>protpars</serviceName>
		<organisation >
			<organisationName>Virginia Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://pathport.bioinformatics.vt.edu:6565/axis/services/phylip</locationURL>
		<interfaceWSDL>http://www.vbi.vt.edu/~pathport/services/wsdls/phylip.wsdl</interfaceWSDL>
		<serviceDescriptionText>Estimate phylogenies from protein sequences (input using the standard one-letter code for amino acids) using the parsimony method.</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>protpars</operationName>
				<operationSpec>&lt;s:arbitrarywsdl xmlns:s=&quot;http://org.embl.ebi.escience/xscufl/0.1alpha&quot;&gt;&lt;s:wsdl&gt;http://www.vbi.vt.edu/~pathport/services/wsdls/phylip.wsdl&lt;/s:wsdl&gt;&lt;s:operation&gt;protpars&lt;/s:operation&gt;&lt;/s:arbitrarywsdl&gt;</operationSpec>
				<operationDescriptionText>Estimate phylogenies from protein sequences (input using the standard one-letter code for amino acids) using the parsimony method.</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>in0:fastaString</parameterName>
						<messageName>protparsRequest</messageName>
						<parameterDescription>Protein sequences in FASTA format. All sequences should have the same length and can include gaps and question marks.
</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#protein_sequence</semanticType>
						<parameterFormat>http://www.mygrid.org.uk/ontology#fasta_format</parameterFormat>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in1:descString</parameterName>
						<messageName>protparsRequest</messageName>
						<parameterDescription>Sequence Name or descriptions. </parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>protparsReturn</parameterName>
						<messageName>protparsResponse</messageName>
						<parameterDescription>Return data in XML format using SequenceHomologyML.dtd.
For more information on SequenceHomologyML.dtd visit: http://pathport.vbi.vt.edu/xml/SequenceHomologyML/SequenceHomologyML.dtd_a.html
</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#phylogenetic_record</semanticType>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#predicting</operationTask>
				<operationMethod>http://www.mygrid.org.uk/ontology#phylogenetic_algorithm</operationMethod>
			</serviceOperation>

		</operations>

		<serviceType>WSDL service</serviceType>
	</serviceDescription>

</serviceDescriptions>
