mummerFiles Virginia Bioinformatics Institute http://pathport.bioinformatics.vt.edu:6565/axis/services/mummer http://www.vbi.vt.edu/~pathport/services/wsdls/beta/mummer.wsdl Method for genome comparison. It provides efficient means for comparing an entire genome against another. mummerFiles <s:arbitrarywsdl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:wsdl>http://www.vbi.vt.edu/~pathport/services/wsdls/beta/mummer.wsdl</s:wsdl><s:operation>mummerFiles</s:operation></s:arbitrarywsdl> Method for genome comparison. It provides efficient means for comparing an entire genome against another. in0:reportOutput mummerFilesRequest Select one of the two MUMmer output - MUMs or Extended MUMs false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in1:org1 mummerFilesRequest URL location of the reference sequence data file or sequence data in fasta format. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in2:start1 mummerFilesRequest Start position of first (reference) segment (leave blank for whole genome analysis) false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in3:end1 mummerFilesRequest End position of first (reference) segment (leave blank for whole genome analysis) false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in4:annotation_type1 mummerFilesRequest Select the annotation type. Two possible values: No annotations | Minimal annotations No annotations false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in5:org2 mummerFilesRequest URL location of the reference sequence data file or sequence data in fasta format. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in6:start2 mummerFilesRequest Start position of second (query) segment (leave blank for whole genome analysis) false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in7:end2 mummerFilesRequest End position of second (query) segment (leave blank for whole genome analysis). false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in8:annotation_type2 mummerFilesRequest Select the annotation type. Two possible values: No annotations | Minimal annotations No annotations false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in9:matchLength mummerFilesRequest Minimum length of match. For example 25 25 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in10:clusterMatchLength mummerFilesRequest Minimum length of cluster match. For example 100 100 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in11:fraction mummerFilesRequest Fraction of separation for diagonal difference. For example 0.12 0.12 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in12:separation mummerFilesRequest Maximum separation between matches in cluster. For example 600 600 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in13:separation mummerFilesRequest Set error-rate cutoff. For example 0.02 is two percent 0.1 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter mummerFilesReturn mummerFilesResponse Return Genome Comparison files false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter http://www.mygrid.org.uk/ontology#pairwise_local_aligning http://www.mygrid.org.uk/ontology#Smith-Waterman_sequence_alignment_algorithm WSDL service