<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>getStatistics</serviceName>
		<organisation >
			<organisationName>Virginia Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://valar.bioinformatics.vt.edu:6565/axis/services/multtest</locationURL>
		<interfaceWSDL>http://www.vbi.vt.edu/~pathport/services/wsdls/multtest.wsdl</interfaceWSDL>
		<serviceDescriptionText>Used to identify differentially expressed genes in microarray experiments. It provides a convenient way to compute test statistics, e.g., two-sample Welch t-statistics, F-statistics. The results are returned as a subset of the MADM format (microarray data minning format).</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>getStatistics</operationName>
				<operationSpec>&lt;s:arbitrarywsdl xmlns:s=&quot;http://org.embl.ebi.escience/xscufl/0.1alpha&quot;&gt;&lt;s:wsdl&gt;http://www.vbi.vt.edu/~pathport/services/wsdls/multtest.wsdl&lt;/s:wsdl&gt;&lt;s:operation&gt;getStatistics&lt;/s:operation&gt;&lt;/s:arbitrarywsdl&gt;</operationSpec>
				<operationDescriptionText>Used to identify differentially expressed genes in microarray experiments. It provides a convenient way to compute test statistics, e.g., two-sample Welch t-statistics, F-statistics. The results are returned as a subset of the MADM format (microarray data minning format).</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>in0:dmatrixf</parameterName>
						<messageName>getStatisticsRequest</messageName>
						<parameterDescription>Input data or URL of the input data. Example of data: 
http://www.vbi.vt.edu/pathport/services/wsdls/tmp2100rmulttest .
In this example the URL or the data can be used as input.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#microarray_database_record</semanticType>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in1:stattype</parameterName>
						<messageName>getStatisticsRequest</messageName>
						<parameterDescription>The type of statistics test. One of the following options: 
two-sample Welch t-statistics (unequal variances) |
two-sample Welch t-statistics (equal variances) |
F-statistics |
block F-statistics |
Wilcoxon rank sum statistics 

</parameterDescription>
						<defaultValue>two-sample Welch t-statistics (unequal variances)</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in2:alphalevel</parameterName>
						<messageName>getStatisticsRequest</messageName>
						<parameterDescription>Threshold to determine the differential gene expression profile. e.g. 0.05
</parameterDescription>
						<defaultValue>0.05</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in3:adjpvalue</parameterName>
						<messageName>getStatisticsRequest</messageName>
						<parameterDescription>The type of p-value adjustment. One of the following options:
NONE |
Bonferroni |
Holm |
Hochberg |
SidakSS |
SidakSD |
BH |
BY 

</parameterDescription>
						<defaultValue>NONE</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in4:dsdescription</parameterName>
						<messageName>getStatisticsRequest</messageName>
						<parameterDescription>Data source description. e.g. microarray data analysis
</parameterDescription>
						<defaultValue>microarray data analysis</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>getStatisticsReturn</parameterName>
						<messageName>getStatisticsResponse</messageName>
						<parameterDescription>Returns differentially expressed genes in MADM format. </parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#gene_expression_profile</semanticType>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#manipulating</operationTask>
			</serviceOperation>

		</operations>

		<serviceType>WSDL service</serviceType>
	</serviceDescription>

</serviceDescriptions>
