<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/TAVERNA/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>getDnacuts</serviceName>
		<organisation >
			<organisationName>Virginia Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://64.92.170.71:6565/axis/services/dnacuts</locationURL>
		<interfaceWSDL>http://staff.vbi.vt.edu/pathport/services/wsdls/dnacuts.wsdl</interfaceWSDL>
		<serviceDescriptionText>Digests DNA sequences using a large set of enzymes.</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>getDnacuts</operationName>
				<operationSpec>&lt;s:arbitrarywsdl xmlns:s=&quot;http://org.embl.ebi.escience/xscufl/0.1alpha&quot;&gt;&lt;s:wsdl&gt;http://staff.vbi.vt.edu/pathport/services/wsdls/dnacuts.wsdl&lt;/s:wsdl&gt;&lt;s:operation&gt;getDnacuts&lt;/s:operation&gt;&lt;/s:arbitrarywsdl&gt;</operationSpec>
				<operationDescriptionText>Digests DNA sequences using a large set of enzymes.</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>in2:sitelength</parameterName>
						<messageName>getDnacutsRequest</messageName>
						<parameterDescription>Integer. The smallest enzyme sequence cut that is allowed (anything smaller is ignored). For example 4</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in0:sequence</parameterName>
						<messageName>getDnacutsRequest</messageName>
						<parameterDescription>The file name(URL) containing DNA sequence(s) or an actual list of DNA sequence(s).Sequence should be in fasta format.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#nucleotide_sequence</semanticType>
						<parameterFormat>http://www.mygrid.org.uk/ontology#fasta_format</parameterFormat>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in1:linearOrcircular</parameterName>
						<messageName>getDnacutsRequest</messageName>
						<parameterDescription>Specify whether the DNA sequence is linear or circular</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in3:enzymelist</parameterName>
						<messageName>getDnacutsRequest</messageName>
						<parameterDescription>The list of enzymes to digest with. Enzyme name are separated by&quot;|&quot;. Choose&quot;all&quot;to select all available enzyme.Possible enzyme name: AarI |AasI |AatI |AatII |AauI |AccI |AccII |AccIII |Acc16I |Acc36I |Acc65I |Acc113I |AccB1I |AccB7I |AccBSI |AceIII |AciI |AclI |AclWI |AcsI |AcuI |AcvI |AcyI |AdeI |AfaI |AfeI |AflI |AflII |AflIII |AgeI |AhaIII |AhdI |AhlI |AleI |AloI |AluI |AlwI |Alw21I |Alw26I |Alw44I |AlwNI |Ama87I |AocI |Aor51HI |ApaI |ApaBI |ApaLI |ApoI |AscI |AseI |AsiAI |AsiSI |AsnI |AspI |Asp700I |Asp718I |AspEI |AspHI |AspLEI |AspS9I |AsuI |AsuII |AsuC2I |AsuHPI |AsuNHI |AvaI |AvaII |AvaIII |AviII |AvrII |AxyI |BaeI |BalI |BamHI |BanI |BanII |BanIII |BbeI |Bbr7I |BbrPI |BbsI |BbuI |BbvI |BbvII |Bbv12I |BbvCI |BccI |Bce83I |BceAI |BcefI |BcgI |BciVI |BclI |BcnI |BcoI |BcuI |BetI |BfaI |BfiI |BfmI |BfrI |BfrBI |BfuI |BfuAI |BfuCI |BglI |BglII |BinI|BlnI |BloHII |BlpI |Bme18I |Bme1390I |Bme1580I |BmgI |BmgBI |BmrI |BmtI |BmyI |BoxI |BpiI |BplI |BpmI |Bpu10I |Bpu14I |Bpu1102I |BpuAI |BpuEI |BsaI |Bsa29I |BsaAI |BsaBI |BsaHI |BsaJI |BsaMI |BsaOI |BsaWI |BsaXI|BsbI |BscI |Bsc4I |BscAI |BscBI |BscCI |BscFI |BscGI |Bse1I |Bse8I |Bse21I |Bse118I |BseAI |BseBI |BseCI |BseDI |Bse3DI |BseGI |BseJI |BseLI |BseMI |BseMII |BseNI |BsePI |BseRI |BseSI |BseXI |BseX3I |BseYI |BsgI |BshI |Bsh1236I |Bsh1285I |BshFI |BshNI |BshTI |BsiI |BsiBI |BsiCI |BsiEI |BsiHKAI |BsiHKCI |BsiLI |BsiMI |BsiQI |BsiSI |BsiWI |BsiXI |BsiYI |BsiZI |BslI |BsmI |BsmAI |BsmBI |BsmFI |Bso31I |BsoBI |BsoMAI |Bsp13I |Bsp19I |Bsp24I |Bsp68I |Bsp106I |Bsp119I |Bsp120I |Bsp143I |Bsp143II |Bsp1286I |Bsp1407I |Bsp1720I |BspA2I |BspCI |BspCNI |BspDI |BspEI |BspGI |BspHI |BspLI |BspLU11I |BspMI |BspMII |BspNCI |BspPI |BspTI |BspT104I |BspT107I |BspTNI |BspXI |BsrI |BsrBI |BsrBRI |BsrDI |BsrFI |BsrGI |BsrSI |BssAI |BssECI |BssHI |BssHII |BssKI |BssNAI |BssSI |BssT1I |Bst6I |Bst71I |Bst98I |Bst1107I |BstACI |BstAPI |BstBI |Bst2BI |BstBAI |Bst4CI |BstC8I |BstDEI |BstDSI |BstEII |BstENI |BstENII |BstF5I |BstFNI |BstH2I |BstHHI |BstHPI |BstKTI |BstMAI |BstMCI |BstMWI |BstNI |BstNSI |BstOI |BstPI |BstPAI |BstSCI |BstSFI |BstSNI |BstUI |Bst2UI |BstV1I |BstV2I |BstXI |BstX2I |BstYI |BstZI |BstZ17I |Bsu15I |Bsu36I |BsuRI |BsuTUI |BtgI |BthCI |BtrI |BtsI |Cac8I |CaiI |CauII |CciNI |CdiI |CelII |CfoI |CfrI |Cfr9I |Cfr10I |Cfr13I |Cfr42I |ChaI |CjeI |CjePI |ClaI |CpoI |CspI |Csp6I |Csp45I |CspAI |CviAII |CviJI |CviRI |CviTI |CvnI |DdeI |DpnI |DpnII |DraI |DraII |DraIII |DrdI |DrdII |DsaI |DseDI |EaeI |EagI |Eam1104I |Eam1105I |EarI |EciI |Ecl136II |EclHKI |EclXI |Eco24I |Eco31I |Eco32I |Eco47I |Eco47III |Eco52I |Eco57I |Eco72I |Eco81I |Eco88I |Eco91I |Eco105I |Eco130I |Eco147I |EcoHI |EcoICRI |Eco57MI |EcoNI |EcoO65I |EcoO109I |EcoRI |EcoRII |EcoRV |EcoT14I |EcoT22I |EcoT38I |EgeI |EheI |ErhI |EsaBC3I |EspI |Esp3I |FalI |FatI |FauI |FauNDI |FbaI |FblI |FinI |FmuI |FnuDII |Fnu4HI |FokI |FriOI |FseI |FspI |FspAI |Fsp4HI |FunI |FunII |GdiII |GsuI |HaeI |HaeII |HaeIII |HaeIV |HapII |HgaI |HgiAI |HgiCI |HgiEII |HgiJII |HhaI |Hin1I |Hin4I |Hin4II |Hin6I |HinP1I |HincII |HindII |HindIII |HinfI |HpaI |HpaII |HphI |Hpy8I |Hpy99I |Hpy178III |Hpy188I |Hpy188III |HpyCH4I |HpyCH4III |HpyCH4IV |HpyCH4V |HpyF10VI |Hsp92I |Hsp92II |HspAI |ItaI |KasI |KpnI |Kpn2I |KspI |Ksp22I |Ksp632I |KspAI |Kzo9I |LpnI |LspI |LweI |MabI |MaeI |MaeII |MaeIII |MamI |MbiI |MboI |MboII |McrI |MfeI |MflI |MhlI |MjaIV |MlsI |MluI |MluNI |MlyI |Mly113I |MmeI |MnlI |Mph1103I |MroI |MroNI |MroXI |MscI |MseI |MslI |MspI |Msp20I |MspA1I |MspCI |MspR9I |MssI |MstI |MunI |MvaI |Mva1269I |MvnI |MwoI |NaeI |NarI |NciI |NcoI |NdeI |NdeII |NgoAIV |NgoMIV |NheI |NlaIII |NlaIV |Nli3877I |NmuCI |NotI |NruI |NruGI |NsbI |NsiI |NspI |NspIII |NspV |NspBII |OliI |PacI |PaeI |PaeR7I |PagI |PalI |PauI |PceI |PciI |PctI |PdiI |PdmI |Pfl23II |Pfl1108I |PflBI |PflFI |PflMI |PinAI |PleI |Ple19I |PmaCI |PmeI |PmlI |PpiI |PpsI |Ppu10I |PpuMI |PpuXI |PshAI |PshBI |PsiI |Psp03I |Psp5II |Psp6I |Psp1406I |PspAI |Psp124BI |PspEI |PspGI |PspLI |PspN4I |PspOMI |PspPI |PspPPI |PsrI |PssI |PstI |PsuI |PsyI |PvuI |PvuII |RcaI |RleAI |RsaI |RsrII |Rsr2I |SacI |SacII |SalI |SanDI |SapI |SatI |SauI |Sau96I |Sau3AI |SbfI |ScaI |SchI |SciI |ScrFI |SdaI |SduI |SecI |SelI |SexAI |SfaNI |SfcI |SfeI |SfiI |SfoI |Sfr274I |Sfr303I |SfuI |SgfI |SgrAI |SgrBI |SimI |SinI |SlaI |SmaI |SmiI |SmiMI |SmlI |SmuI |SnaI |SnaBI |SpaHI |SpeI |SphI |SplI |SrfI |Sse9I |Sse232I |Sse8387I |Sse8647I |SseBI |SspI |SspBI |SspD5I |SstI |SstII |Sth132I |StsI |StuI |StyI |SunI |SwaI |TaaI |TaiI |TaqI |TaqII |TaqII |TasI |TatI |TauI |TelI |TfiI |ThaI |TliI |Tru1I |Tru9I |TscI |TseI |Tsp45I |Tsp509I |Tsp4CI |TspDTI |TspEI |TspGWI |TspRI |Tth111I |Tth111II |TthHB8I |UbaHI |UbaMI |UbaPI |UnbI |Van91I |Vha464I |VneI |VpaK11AI |VpaK11BI |VspI |XagI |XapI |XbaI |XceI |XcmI |XhoI |XhoII |XmaI |XmaIII |XmaCI |XmaJI |XmiI |XmnI |XspI |ZhoI |ZraI |Zsp2I</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>getDnacutsReturn</parameterName>
						<messageName>getDnacutsResponse</messageName>
						<parameterDescription>Returns the list of restriction enzymes and their associated list of digested DNA fragments.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#REBASE_record</semanticType>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#predicting</operationTask>
				<operationResource>http://www.mygrid.org.uk/ontology#REBASE</operationResource>
			</serviceOperation>

		</operations>

		<serviceType>WSDL service</serviceType>
	</serviceDescription>

</serviceDescriptions>
