<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/TAVERNA/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>getCogId</serviceName>
		<organisation >
			<organisationName>Virginia Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://pathport.bioinformatics.vt.edu:6565/axis/services/cognitor</locationURL>
		<interfaceWSDL>http://www.vbi.vt.edu/~pathport/services/wsdls/cognitor.wsdl</interfaceWSDL>
		<serviceDescriptionText>Compares a protein sequence against COG (Cluster of Orthologous Groups of protein)database,and returns information of the COG that the query protein belong to.</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>getCogId</operationName>
				<operationSpec>&lt;s:arbitrarywsdl xmlns:s=&quot;http://org.embl.ebi.escience/xscufl/0.1alpha&quot;&gt;&lt;s:wsdl&gt;http://www.vbi.vt.edu/~pathport/services/wsdls/cognitor.wsdl&lt;/s:wsdl&gt;&lt;s:operation&gt;getCogId&lt;/s:operation&gt;&lt;/s:arbitrarywsdl&gt;</operationSpec>
				<operationDescriptionText>Compares a protein sequence against COG (Cluster of Orthologous Groups of protein)database,and returns information of the COG that the query protein belong to.</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>in0:sequence_id</parameterName>
						<messageName>getCogIdRequest</messageName>
						<parameterDescription>Sequence id (optional).Specify you protein sequence(s) id(s)</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#protein_sequence_id</semanticType>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in1:sequence_target</parameterName>
						<messageName>getCogIdRequest</messageName>
						<parameterDescription>Input sequence in fasta format can be a list of protein sequence(s) or sequence file attachment or file URL containing protein sequence(s).</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#protein_sequence</semanticType>
						<parameterFormat>http://www.mygrid.org.uk/ontology#fasta_format</parameterFormat>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>in2:outFormat</parameterName>
						<messageName>getCogIdRequest</messageName>
						<parameterDescription>Output format. 2 possible values:&quot;DAS1&quot;or&quot;Raw&quot;</parameterDescription>
						<defaultValue>DAS1</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>getCogIdReturn</parameterName>
						<messageName>getCogIdResponse</messageName>
						<parameterDescription>Returns information of the COG that the query protein belong to.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#COG_record</semanticType>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#retrieving</operationTask>
				<operationMethod>http://www.mygrid.org.uk/ontology#phylogenetic_algorithm</operationMethod>
			</serviceOperation>

		</operations>

		<serviceType>WSDL service</serviceType>
	</serviceDescription>

</serviceDescriptions>
