translating_Blast Virginia Bioinformatics Institute http://pathport.bioinformatics.vt.edu:6565/axis/services/blastbt http://staff.vbi.vt.edu/pathport/services/wsdls/clusterblast.wsdl Performs sequence similarity searching against all of the available sequences in the VBI (Virginia Bioinformatics Institute) database using blastx, tblast or tblastx. It uses VBI cluster system to improve Blast program speed. translating_Blast <s:arbitrarywsdl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:wsdl>http://staff.vbi.vt.edu/pathport/services/wsdls/clusterblast.wsdl</s:wsdl><s:operation>translating_Blast</s:operation></s:arbitrarywsdl> Performs sequence similarity searching against all of the available sequences in the VBI (Virginia Bioinformatics Institute) database using blastx, tblast or tblastx. It uses VBI cluster system to improve Blast program speed. in10:dropoffFinalGap translating_BlastRequest Dropoff value for final gapped alignments in bits. For example 25 25 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in7:wordSize translating_BlastRequest Integer. Word font size. For example 3 3 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in2:program translating_BlastRequest Specify the translating program. 3 Possible values: "TRANSLATED query - PROTEIN database [blastx]": for nucleotide sequences against a protein database. "PROTEIN query - TRANSLATED database [tblastn]": for protein sequence against a nucleotide database."TRANSLATED query - TRANSLATED database [tblastx]": For nucleotide sequence and nucleotide database.For example to run a blastx select: TRANSLATED query - PROTEIN database [blastx] false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in0:test translating_BlastRequest Query sequence in fasta format or URL or file containing the sequence in fasta format. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in4:expect translating_BlastRequest The expectation value. For example 10.0 10 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in8:matrix translating_BlastRequest Matrix name. Possible values: PAM30|PAM70|BLOSUM62|BLOSUM80|BLOSUM45 false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in6:dropoffGap translating_BlastRequest Dropoff value for gapped alignment.For example 15 15 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in1:dbList translating_BlastRequest Database list. two possible values: NCBI NR or NCBI NT false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in5:gapCost translating_BlastRequest The cost to open an existence gap and extension gap.For example: "Existence: 12 Extension: 1" | "Existence: 7 Extension: 2" Existence: 11 Extension: 1 false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in9:dropoffUnGap translating_BlastRequest Dropoff value for ungapped extensions in bits. For example 7 7 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in3:output_Format translating_BlastRequest Output format. Possible values are XML or Plain Text false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter translating_BlastReturn translating_BlastResponse Return blast report in specified output format. false http://www.mygrid.org.uk/ontology#BLAST_report String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter http://www.mygrid.org.uk/ontology#sequence_aligning http://www.mygrid.org.uk/ontology#BLAST_Basic_Local_Alignment_Search_Tool WSDL service