blastp Virginia Bioinformatics Institute http://pathport.bioinformatics.vt.edu:6565/axis/services/blastbt http://staff.vbi.vt.edu/pathport/services/wsdls/clusterblast.wsdl Performs protein sequence similarity searching against all of the available protein sequences in the VBI (Virginia Bioinformatics Institute) database using the BLAST program. It uses VBI cluster system to improve Blast program speed. blastp <s:arbitrarywsdl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:wsdl>http://staff.vbi.vt.edu/pathport/services/wsdls/clusterblast.wsdl</s:wsdl><s:operation>blastp</s:operation></s:arbitrarywsdl> Performs protein sequence similarity searching against all of the available protein sequences in the VBI (Virginia Bioinformatics Institute) database using the BLAST program. It uses VBI cluster system to improve Blast program speed. in10:dropoffFinalGap blastpRequest Dropoff value for final gapped alignments in bits. For example 25 25 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in7:wordSize blastpRequest Integer. Word font size. For example 3 3 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in2:output_format blastpRequest Output format. Possible values are XML or Plain Text false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in0:test blastpRequest Protein sequence in fasta format or URL or file containing the sequence in fasta format. false http://www.mygrid.org.uk/ontology#protein_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in4:openGap blastpRequest Integer. The cost to open a gap. For example 11 11 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in8:matrix blastpRequest Matrix name. Possible values: PAM30|PAM70|BLOSUM62|BLOSUM80|BLOSUM45 BLOSUM62 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in6:dropoffGap blastpRequest Integer. Dropoff value for gapped alignment. For example 15 15 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in1:dbList blastpRequest Database list. One possible value: NCBI NR false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in5:extendGap blastpRequest Integer. The cost to extend a gap. For example 1 1 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in9:dropoffUnGap blastpRequest Dropoff value for ungapped extensions in bits. For example 7 7 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in3:expect blastpRequest The expectation value. For example 10.0 10.0 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter blastpReturn blastpResponse Return blast report in specified output format false http://www.mygrid.org.uk/ontology#BLAST_report http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter http://www.mygrid.org.uk/ontology#sequence_aligning http://www.mygrid.org.uk/ontology#BLAST_Basic_Local_Alignment_Search_Tool WSDL service