TFmodeller Center for Genomic Sciences http://www.ccg.unam.mx/ http://maya.ccg.unam.mx:8080/axis/TFmodellerService.jws http://maya.ccg.unam.mx:8080/axis/TFmodellerService.jws?WSDL Scans a protein sequence P against a library of protein-DNA complexes and builds comparative models of P if good templates are found. These models are used to get an idea of the P-DNA interface, its evolution and the putative recognised DNA sequences. Detailed info about this service can be found at: http://maya.ccg.unam.mx/~tfmodell/tutorial.html TFmodeller <s:arbitrarywsdl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:wsdl>http://maya.ccg.unam.mx:8080/axis/TFmodellerService.jws?WSDL</s:wsdl><s:operation>TFmodeller</s:operation></s:arbitrarywsdl> Scans a protein sequence P against a library of protein-DNA complexes and builds comparative models of P if good templates are found. These models are used to get an idea of the P-DNA interface, its evolution and the putative recognised DNA sequences. Detailed info about this service can be found at: http://maya.ccg.unam.mx/~tfmodell/tutorial.html proteinFASTAsequence TFmodellerRequest One or more proteins sequence in fasta format known or suspected to bind to DNA. For example, the FNR transcription factor in E.coli: >P0A9E5|FNR_ECOLI Fumarate and nitrate reduction regulato... MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGMLAVKGKYITIENNDALAQLAGHTRNVA false http://www.mygrid.org.uk/ontology#protein_sequence http://www.mygrid.org.uk/ontology#fasta_format String TFmodellerReturn TFmodellerResponse Returns a matrix of homologous interface contacts, that shows a multiple interface alignment of the user's input sequence to one or more structurally related protein-DNA complexes. false http://www.mygrid.org.uk/ontology#pairwise_sequence_alignment_report http://www.mygrid.org.uk/ontology#pairwise_local_aligning http://www.mygrid.org.uk/ontology#BLAST_Basic_Local_Alignment_Search_Tool WSDL service