charge European Bioinformatics Institute http://www.ebi.ac.uk/ EBI http://www.ebi.ac.uk/soaplab/emboss4/services/protein_composition.charge http://www.ebi.ac.uk/soaplab/emboss4/services/protein_composition.charge?wsdl Reads a protein sequence and writes a file (or plots a graph) of the charges of the amino acids within a window of specified length as the window is moved along the sequence. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/charge.html charge Reads a protein sequence and writes a file (or plots a graph) of the charges of the amino acids within a window of specified length as the window is moved along the sequence. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/charge.html seqall_usa Type: string. Protein sequence. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example, database:accession -->embl:X65923 or swissprot:Q7M4G0 | database:entry_name -->swissprot:AMIC_PSEAE |database:ID_name -->embl:paamir. Choose either this parameter or the seqall_direct_data parameter but not both together. Parameter mandatory if the seqall_direct_data parameter has not been chosen. String seqall_direct_data Type: string. Protein sequence. Choose this parameter if you want to provide the 'seqall' value as string (protein sequence). Parameter mandatory if the seqall_usa parameter hasn't been chosen. http://www.mygrid.org.uk/ontology#protein_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String sformat Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. String sbegin Type: long. The first position to be used in the sequence, for example: sbegin=1 (default value) means start with the first base in the sequence. This is an optional parameter. String send Type: long. The last position to be used in the sequence. This is an optional parameter. By default it is the end of the sequence. String sprotein Type: boolean. Is the sequence a protein? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String snucleotide Type: boolean. Is the sequence a nucleotide? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String sreverse Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. False by default. String slower Type: boolean. Convert the sequence to lower case. This is an optional parameter. False by default. String supper Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. False by default. String graph_format Type: string. Format of the graphical output. This is an optional parameter. The allowed values for this parameter are: png, postscript. The default is 'png'. png String aadata_direct_data Type: string. Amino acids properties and molecular weight data. This is an optional parameter. The parameters 'aadata_direct_data' and 'aadata_url' are mutually exclusive. String aadata_url Type: string. URL of Amino acids properties and molecular weight data. This is an optional parameter. The parameters 'aadata_direct_data' and 'aadata_url' are mutually exclusive. Eamino.dat String window Type: long. Window size. This is an optional parameter. The default is 5. 5 String plot Type: boolean(yes/No). Produce graphic. This is an optional parameter. The default is No. N String report Type: string. A general report for the underlying analysis job. String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. String outfile Returns a file containing the charges of the amino acids within a window starting at each position along the sequence. The output file contains two columns separated by space or TAB characters. The first column is the position of the start of the window. The second column is the charge of the amino acids within that window. String Graphics_in_Postscript If the option '-plot' is set to 'yes' then it displays a graph of the charge along the sequence in 'png' format. String Graphics This parameter does not work. byte[] Graphics_in_PNG If the option '-plot' is set to 'yes' then it displays a graph of the charge along the sequence in 'png' format. byte[][] http://www.mygrid.org.uk/ontology#displaying http://www.mygrid.org.uk/ontology#protein_sequence_database Soaplab service