<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/TAVERNA/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>seqwords</serviceName>
		<organisation >
			<organisationName>European Bioinformatics Institute</organisationName>
			<organisationDescriptionText>http://www.ebi.ac.uk/</organisationDescriptionText>
			<organisationKey>EBI</organisationKey>
		</organisation>

		<locationURL>http://www.ebi.ac.uk/soaplab/emboss4/services/protein_3d_structure.seqwords</locationURL>
		<interfaceWSDL>http://www.ebi.ac.uk/soaplab/emboss4/services/protein_3d_structure.seqwords?wsdl</interfaceWSDL>
		<serviceDescriptionText>Generates DHF(domain hits file) files from keyword search of UniProt. Detailed info about this operation can be found at the following link: http://emboss.bioinformatics.nl/cgi-bin/emboss/help/seqwords</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>seqwords</operationName>
				<operationDescriptionText>Generates DHF(domain hits file) files from keyword search of UniProt. Detailed info about this operation can be found at the following link: http://emboss.bioinformatics.nl/cgi-bin/emboss/help/seqwords</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>keyfile_direct_data</parameterName>
						<parameterDescription>Type: string. Lists of keywords specific to a number of SCOP or CATH nodes, e.g. families and superfamilies. Each list of keywords is given after a block of SCOP or CATH classification records; for family-specific search terms, the block must contain a CL, FO, SF and an FA record. For superfamily-specific terms, clearly only the CL, FO and SF should be specified. A single keyword must be given per line after the record &apos;TE&apos;. Each block of SCOP or CATH classification records and search terms must be delimited by the record &apos;//&apos;. This is a mandatory parameter if the parameter &apos;keyfile_url&apos; is not chosen. Both parameters are mutually exclusive.
An example of input is available here: http://emboss.bioinformatics.nl/cgi-bin/emboss/help/seqwords#input.1</parameterDescription>
						<semanticType>http://www.mygrid.org.uk/ontology#SCOP_record</semanticType>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>keyfile_url</parameterName>
						<parameterDescription>Type: string. URL of Lists of keywords specific to a number of SCOP or CATH nodes, e.g. families and superfamilies. Each list of keywords is given after a block of SCOP or CATH classification records; for family-specific search terms, the block must contain a CL, FO, SF and an FA record. For superfamily-specific terms, clearly only the CL, FO and SF should be specified. A single keyword must be given per line after the record &apos;TE&apos;. Each block of SCOP or CATH classification records and search terms must be delimited by the record &apos;//&apos;. This is a mandatory parameter if the parameter &apos;keyfile_direct_data&apos; is not chosen. Both parameters are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>spfile_direct_data</parameterName>
						<parameterDescription>Type: string. swissprot-format sequence input to search. This is a mandatory parameter if the parameter &apos;spfile_url&apos; is not chosen. Both parameters are mutually exclusive. An example of input can be found here (seqwords.seq): http://emboss.bioinformatics.nl/cgi-bin/emboss/help/seqwords#input.1</parameterDescription>
						<semanticType>http://www.mygrid.org.uk/ontology#UniProt_record</semanticType>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>spfile_url</parameterName>
						<parameterDescription>Type: string. URL of swissprot-format sequence input to search. This is a mandatory parameter if the parameter &apos;spfile_direct_data&apos; is not chosen. Both parameters are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>report</parameterName>
						<parameterDescription>Type: string. A general report for the underlying analysis job.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>detailed_status</parameterName>
						<parameterDescription>Type: long. The exit code of the underlying analysis job, 0 means the job returned normally.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outfile</parameterName>
						<parameterDescription>Return a &apos;domain hits file&apos; (DHF) from keyword search of UniProt. The file contains two lines per hit, the first is a description of the hit in 16 text tokens delimited by &apos;^&apos;. The second line contains the protein sequence.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#retrieving</operationTask>
			</serviceOperation>

		</operations>

		<serviceType>Soaplab service</serviceType>
	</serviceDescription>

</serviceDescriptions>
