rocon European Bioinformatics Institute http://www.ebi.ac.uk/ EBI http://www.ebi.ac.uk/soaplab/emboss4/services/protein_3d_structure.rocon http://www.ebi.ac.uk/soaplab/emboss4/services/protein_3d_structure.rocon?wsdl Reads a DHF file (domain hits file) of hits (sequences of unknown structural classification) and a domain families file (validation sequences of known classification) and writes a "hits file" for the hits, which are classified and rank-ordered on the basis of score. Generates a hits file from comparing two DHF files. Detailed info about this operation can be found at the following link: http://pro.genomics.purdue.edu/cgi-bin/emboss/help/rocon rocon Reads a DHF file (domain hits file) of hits (sequences of unknown structural classification) and a domain families file (validation sequences of known classification) and writes a "hits file" for the hits, which are classified and rank-ordered on the basis of score. Generates a hits file from comparing two DHF files. Detailed info about this operation can be found at the following link: http://pro.genomics.purdue.edu/cgi-bin/emboss/help/rocon hitsinfile_direct_data Type: string. DHF file (domain hits file) (input). A 'domain hits file' contains database hits (sequences) with domain classification information, in the DHF format (FASTA or EMBL-like). The hits are relatives to a SCOP or CATH family and are found from a search of a sequence database. This is a mandatory parameter if the parameter 'hitsinfile_url' is not chosen. Both parameters are mutually exclusive. An example can be found here: http://pro.genomics.purdue.edu/cgi-bin/emboss/help/rocon#3.0 String hitsinfile_url Type: string. URL of DHF file (domain hits file) (input). A 'domain hits file' contains database hits (sequences) with domain classification information, in the DHF format (FASTA or EMBL-like). The hits are relatives to a SCOP or CATH family and are found from a search of a sequence database. This is a mandatory parameter if the parameter 'hitsinfile_direct_data' is not chosen. Both parameters are mutually exclusive. String validinfile_direct_data Type: string. Domain families file (input). A 'domain families file' contains sequence relatives (hits) for each of a number of different SCOP or CATH families found from searching a sequence database, e.g. by using SEQSEARCH (psiblast). The file contains the collated search results for the indvidual families; only those hits of unambiguous family assignment are included. This is a mandatory parameter if the parameter 'validinfile_url' is not chosen. Both parameters are mutually exclusive. An example of input can be found here: http://pro.genomics.purdue.edu/cgi-bin/emboss/help/rocon#3.0 String validinfile_url Type: string. URL of domain families file (input). A 'domain families file' contains sequence relatives (hits) for each of a number of different SCOP or CATH families found from searching a sequence database, e.g. by using SEQSEARCH (psiblast). The file contains the collated search results for the indvidual families; only those hits of unambiguous family assignment are included. This is a mandatory parameter if the parameter 'validinfile_direct_data' is not chosen. Both parameters are mutually exclusive. String thresh Type: long. This option specifies the overlap threshold for hits. This is the minimum length (residues) of overlap required for two hits with the accession number to be counted as the same hit. The accession number of the hit, and the start and end point respectively of the hit relative to full length sequence are provided in the lists of hits in the DHF input file. The overlap is determined from the start and end points of the hit. For example two hits with the start and end points of 1-100 and 91-190 respectively are considered to be the same hit if they have the same accession numbers and the overlap threshold is 10 or less. This is an optional parameter. The default is 10. 10 String mode Type: string. This option specifies the classification scheme to use. This is an optional parameter. The allowed values for this parameter are: 1(Family classification scheme)| 2((Not yet available))|. The default is 1 1 false String report Type: string. A general report for the underlying analysis job. String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. String hitsoutfile Returns a 'hits file'(a list of hits (e.g. from a prediction method) that are classified and rank-ordered on the basis of score, p-value, E-value etc). The output contains: Accession number of hits; Start and end positions of the hit relative to the full length sequence. http://www.mygrid.org.uk/ontology#structural_alignment_report String http://www.mygrid.org.uk/ontology#structural_aligning http://www.mygrid.org.uk/ontology#structural_alignment_algorithm Soaplab service