tmap European Bioinformatics Institute http://www.ebi.ac.uk/ EBI http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap?wsdl Displays membrane spanning regions. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.1/emboss/apps/tmap.html tmap Displays membrane spanning regions. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.1/emboss/apps/tmap.html sequences_usa Type: string. Protein sequence. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example:database:accession -->embl:X65923 or swissprot:Q7M4G0 | database:entry_name -->swissprot:AMIC_PSEAE |database:ID_name -->embl:paamir.Choose either this parameter or the sequence_direct_data parameter but not both together. Parameter mandatory if the sequence_direct_data parameter has not been chosen. String sequences_direct_data Type: string. Protein sequence alignment with gaps. Choose this parameter if you want to provide the 'sequences' value as string. Parameter mandatory if the sequences_usa parameter hasn't been chosen. An example of input can be found here: http://emboss.sourceforge.net/apps/release/4.1/emboss/apps/tmap.html#input.1 http://www.mygrid.org.uk/ontology#multiple_sequence_alignment_report String sformat Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. String sbegin Type: long. The first position to be used in the sequence, for example: sbegin=1 (default value) means start with the first base in the sequence. This is an optional parameter. String send Type: long. The last position to be used in the sequence. This is an optional parameter. By default it is the end of the sequence. String sprotein Type: boolean. Is the sequence a protein? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String snucleotide Type: boolean. Is the sequence a nucleotide? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String sreverse Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. False by default. String slower Type: boolean. Convert the sequence to lower case. This is an optional parameter. False by default. String supper Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. False by default. String graph_format Type: string. Format of the graphical output. This is an optional parameter. The allowed values for this parameter are: png, postscript, colourps, hpgl. The default is 'png'. png String report Type: string. A general report for the underlying analysis job. String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. String outfile Returns a summary of transmembrane regions. http://www.mygrid.org.uk/ontology#protein_structure String Graphics_in_Postscript Returns a plot of the propensities to form the middle (solid line) and the end (dashed line) of transmembrane regions in postscript format. Bars are displayed in the plot above the regions predicted as being most likely to form transmembrane regions. http://www.mygrid.org.uk/ontology#protein_structure String Graphics Returns a plot of the propensities to form the middle (solid line) and the end (dashed line) of transmembrane regions. Bars are displayed in the plot above the regions predicted as being most likely to form transmembrane regions. byte[] Graphics_in_PNG Returns a plot of the propensities to form the middle (solid line) and the end (dashed line) of transmembrane regions in 'png' format. Bars are displayed in the plot above the regions predicted as being most likely to form transmembrane regions. http://www.mygrid.org.uk/ontology#protein_structure byte[][] http://www.mygrid.org.uk/ontology#predicting http://www.mygrid.org.uk/ontology#secondary_structure_prediction Soaplab service