hmoment European Bioinformatics Institute http://www.ebi.ac.uk/ EBI http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.hmoment http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.hmoment?wsdl Hydrophobic moment calculation. Hydrophic moment is the hydrophobicity of a peptide measured for a specified angle of rotation per residue. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.1/emboss/apps/hmoment.html hmoment Hydrophobic moment calculation. Hydrophic moment is the hydrophobicity of a peptide measured for a specified angle of rotation per residue. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.1/emboss/apps/hmoment.html seqall_usa Type: string. Protein sequence. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example:database:accession -->embl:X65923 or swissprot:Q7M4G0 | database:entry_name -->swissprot:AMIC_PSEAE |database:ID_name -->embl:paamir.Choose either this parameter or the seqall_direct_data parameter but not both together. Parameter mandatory if the seqall_direct_data parameter has not been chosen. String seqall_direct_data Type: string. Protein sequence. Choose this parameter if you want to provide the 'seqall' value as string. Parameter mandatory if the seqall_usa parameter hasn't been chosen. http://www.mygrid.org.uk/ontology#protein_sequence String sformat Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. String sbegin Type: long. The first position to be used in the sequence, for example: sbegin=1 (default value) means start with the first base in the sequence. This is an optional parameter. String send Type: long. The last position to be used in the sequence. This is an optional parameter. By default it is the end of the sequence. String sprotein Type: boolean. Is the sequence a protein? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String snucleotide Type: boolean. Is the sequence a nucleotide? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String sreverse Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. False by default. String slower Type: boolean. Convert the sequence to lower case. This is an optional parameter. False by default. String supper Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. False by default. String graph_format Type: string. Format of the graphical output. This is an optional parameter. The allowed values for this parameter are: png, postscript, colourps, hpgl. The default is 'png'. png String window Type: long. Window size (any Integer value). This is an optional parameter. The default is 10 10 String aangle Type: long. Alpha helix angle (degrees). This is an optional parameter. The default is 100 100 String bangle Type: long. Beta sheet angle (degrees). This is an optional parameter. The default is 160 160 String baseline Type: float. Graph marker line. This is an optional parameter. The default is 0.35 0.35 String plot Type: boolean(Yes/No). Produce graphic. This is an optional parameter. The default is 'No' N String double Type: boolean(Yes/No). Plot two graphs. This is an optional parameter. The default is 'No' false String report Type: string. A general report for the underlying analysis job. String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. String outfile Returns a file containing two columns separated by space or TAB characters. The first column is the position of the start of the window that the hydrophobic moment was calculated in. The second is the hydrophobic moment ('uH'). http://www.mygrid.org.uk/ontology#protein_structure String Graphics_in_Postscript With the '-plot' parameter set to 'Yes' it displays a graphical plot of the hydrophobic moment of the specified alpha helix angle in 'postscript' format. With the '-plot -double' parameters set to 'Yes', it also displays the beta-sheet hydrophobic moment in 'postscript' format. String Graphics byte[] Graphics_in_PNG With the '-plot' parameter set to 'Yes' it displays a graphical plot of the hydrophobic moment of the specified alpha helix angle in 'png' format. With the '-plot -double' parameters set to 'Yes', it also displays the beta-sheet hydrophobic moment in 'png' format. http://www.mygrid.org.uk/ontology#protein_structure byte[][] http://www.mygrid.org.uk/ontology#calculating http://www.mygrid.org.uk/ontology#secondary_structure_prediction Soaplab service