fseqbootall European Bioinformatics Institute http://www.ebi.ac.uk/ EBI http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.fseqbootall http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.fseqbootall?wsdl Bootstrapped sequences algorithm. Reads in a data set, and produces multiple data sets from it by bootstrap resampling. Detailed info about this operation can be found at the following link: http://liv.bmc.uu.se/cgi-bin/emboss/help/fseqbootall fseqbootall Bootstrapped sequences algorithm. Reads in a data set, and produces multiple data sets from it by bootstrap resampling. Detailed info about this operation can be found at the following link: http://liv.bmc.uu.se/cgi-bin/emboss/help/fseqbootall infile_usa Type: string. Any valid sequence. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example:database:accession -->embl:X65923 or swissprot:Q7M4G0 | database:entry_name-->swissprot:AMIC_PSEAE |database:ID_name -->embl:paamir.Choose either this parameter or the sequence_direct_data parameter but not both together. Parameter mandatory if the sequence_direct_data parameter has not been chosen.ssprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example: database:accession; embl:X65923 or swissprot:Q7M4G0, database:entry_name; swissprot:AMIC_PSEAE, database:ID_name; embl:paamir. Choose either this parameter or the sequence_direct_data parameter but not both together. Parameter mandatory if the sequence_direct_data parameter hasn't been chosen. String infile_direct_data Type: string. Any valid sequence. Choose this parameter if you want to provide the 'sequence' value as string. Parameter mandatory if the sequence_usa parameter hasn't been chosen. An example input can be found here: http://liv.bmc.uu.se/cgi-bin/emboss/help/fseqbootall#input.1 http://www.mygrid.org.uk/ontology#biological_sequence String sformat Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. String sbegin Type: long. The first position to be used in the sequence, for example: sbegin=1 (default value) means start with the first base in the sequence. This is an optional parameter. String send Type: long. The last position to be used in the sequence. This is an optional parameter. By default it is the end of the sequence. String sprotein Type: boolean. Is the sequence a protein? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String snucleotide Type: boolean. Is the sequence a nucleotide? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String sreverse Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. False by default String slower Type: boolean. Convert the sequence to lower case. This is an optional parameter. False by default String supper Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. False by default String categories_direct_data Type: string. File of substitution rate categories. This is an optional parameter. No default value available String categories_url Type: string. URL of file of substitution rate categories. This is an optional parameter. 'categories_url' and 'categories_direct_data' are mutually exclusive. String mixfile_direct_data Type: string. Phylip mix output file. This is an optional parameter. No default value available. String mixfile_url Type: string. URL of Phylip mix output file. This is an optional parameter. No default value available.'mixfile_direct_data'and'mixfile_url'are mutually exclusive. String ancfile_direct_data Type: string. Ancestral states file. This is an optional parameter. No default value available.'ancfile_direct_data'and'ancfile_url'are mutually exclusive. String ancfile_url Type: string. URL of ancestral states file. This is an optional parameter. No default value available.'ancfile_direct_data'and'ancfile_url'are mutually exclusive. String weights_direct_data Type: string. Phylip weights file. This is an optional parameter. No default value available.'weights_direct_data'and'weights_url'are mutually exclusive. String weights_url Type: string. URL of Phylip weights file. This is an optional parameter. No default value available.'weights_direct_data'and'weights_url'are mutually exclusive. String factorfile_direct_data Type: string. Factors file. This is an optional parameter. No default value available.'factorfile_direct_data'and'factorfile_url'are mutually exclusive. String factorfile_url Type: string. URL of factors file. This is an optional parameter. No default value available.'factorfile_direct_data'and'factorfile_url'are mutually exclusive. String datatype Type: string. Choose data type. This is an optional parameter. The allowed values for this parameter are: s(Molecular sequences)| m(Discrete Morphology)| r(Restriction Sites)| g(Gene Frequencies). The default is 's'. s String test Type: string. Choose test to use. This is an optional parameter. The allowed values for this parameter are: b(Bootstrap)| j(Jackknife)| c(Permute species for each character)| o(Permute character order)| s(Permute within species)| r(Rewrite data). The default is'b' b String regular Type: boolean(Yes/No). Altered sampling fraction. This is an optional parameter. The default is'No' N String fracsample Type: float. Samples as percentage of sites. This is an optional parameter. Allowed values are numbers from 0.100 to 100.000. The default is 100.0 100.0 String rewriteformat Type: string. Output format. This is an optional parameter. The allowed values for this parameter are:p(PHYLIP)| n(NEXUS)| x(XML). The default is'p'. p String seqtype Type: string. Sequence type. This is an optional parameter. The allowed values for this parameter are: d(dna)| p(protein)| r(rna). The default is 'd'. d String morphseqtype Type: string. Output format. This is an optional parameter. The allowed values for this parameter are: p(PHYLIP)| n(NEXUS). The default is 'p'. p String blocksize Type: long. Block size for bootstraping. This is an optional parameter. Allowed values: Integer 1 or more. The default is 1. 1 String reps Type: long. How many replicates. This is an optional parameter. The default is 100 100 String justweights Type: string. Write out datasets or just weights. This is an optional parameter. The allowed values for this parameter are: d(Datasets)| w(Weights).The default is'd'. d String enzymes Type: boolean(true/false). Is the number of enzymes present in input file. This is an optional parameter. The default is 'false'. false String all Type: boolean(true/false). All alleles present at each locus. This is an optional parameter. The default is 'false'. false String seed Type: long. Random number seed between 1 and 32767 (must be odd). This is an optional parameter. The default is 1. 1 String printdata Type: boolean (Yes/No). Print data at start of run. This is an optional parameter. The default is'No'. false String dotdiff Type: boolean(true/false). Use dot-differencing. This is an optional parameter. The default is'true'. true String progress Type: boolean. Print indications of progress of run. This is an optional parameter. true String report Type: string. A general report for the underlying analysis job. String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. String outfile Returns data sets generated by the resampling process. An example of output: http://liv.bmc.uu.se/cgi-bin/emboss/help/fseqbootall#output.1 http://www.mygrid.org.uk/ontology#biological_sequence String http://www.mygrid.org.uk/ontology#manipulating Soaplab service