frestml European Bioinformatics Institute http://www.ebi.ac.uk/ EBI http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.frestml http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.frestml?wsdl Estimate phylogenies by maximum likelihood using restriction sites data (not restriction fragments but presence/absence of individual sites). Detailed info about this operation can be found at the following link: http://liv.bmc.uu.se/cgi-bin/emboss/help/frestml frestml Estimate phylogenies by maximum likelihood using restriction sites data (not restriction fragments but presence/absence of individual sites). Detailed info about this operation can be found at the following link: http://liv.bmc.uu.se/cgi-bin/emboss/help/frestml data_direct_data Type: string. File containing one or more sets of restriction data. This is a mandatory parameter if the 'data_url' parameter is not chosen. 'data_direct_data' and 'data_url' parameters are mutually exclusive. An example input can be found here: http://liv.bmc.uu.se/cgi-bin/emboss/help/frestml#input.1 String data_url Type: string. URL of File containing one or more sets of restriction data. This is a mandatory parameter if the 'data_direct_data' parameter is not chosen. 'data_direct_data' and 'data_url' parameters are mutually exclusive. String intreefile_direct_data Type: string. Phylip tree file. This is an optional parameter. No default value available. 'intreefile_direct_data' and 'intreefile_url'are mutually exclusive. String intreefile_url Type: string. URL of Phylip tree file. This is an optional parameter. No default value available.'intreefile_direct_data'and'intreefile_url'are mutually exclusive. String weights_direct_data Type: string. Phylip weights file. This is an optional parameter. No default value available.'weights_direct_data'and'weights_url'are mutually exclusive. String weights_url Type: string. URL of Phylip weights file.This is an optional parameter. No default value available.'weights_direct_data'and'weights_url'are mutually exclusive. String njumble Type: long. Number of times to randomise. This is an optional parameter. The default is 0 0 String seed Type: long. Random number seed between 1 and 32767 (must be odd). This is an optional parameter. The default is 1. 1 String outgrno Type: long. Species number to use as outgroup. This is an optional parameter. The default is 0 0 String allsites Type: boolean(true/false). All sites detected. This is an optional parameter. The default is 'true' true String lengths Type: boolean(true/false). Use branch lengths from user trees. This is an optional parameter. The default is'false'. false String sitelength Type: long. Site length. Allowed value: Integer 1 or more. This is an optional parameter. The default is 6. 6 String global Type: boolean(true/false). Global rearrangements. This is an optional parameter. The default is'false'. false String rough Type: boolean(true/false). Speedier but rougher analysis. This is an optional parameter. The default is'true'. true String trout Type: boolean (Yes/No). Write out trees to tree file. This is an optional parameter. The default is'Yes'. Y String printdata Type: boolean (true/false). Print data at start of run. This is an optional parameter. The default is'false'. false String progress Type: boolean(true/false). Print indications of progress of run. This is an optional parameter. The default is'true' true String treeprint Type: boolean(true/false). Print out tree. This is an optional parameter. The default is'true'. true String report Type: string. A general report for the underlying analysis job. String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. String outfile Returns phylogenetic tree by maximum likelihood using restriction sites data . http://www.mygrid.org.uk/ontology#phylogenetic_tree String outtreefile Returns phylogenetic tree file. String http://www.mygrid.org.uk/ontology#predicting http://www.mygrid.org.uk/ontology#phylogenetic_algorithm Soaplab service