frestdist European Bioinformatics Institute http://www.ebi.ac.uk/ EBI http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.frestdist http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.frestdist?wsdl Calculate distance matrix from restriction sites or fragments. Detailed info about this operation can be found at the following link: http://liv.bmc.uu.se/cgi-bin/emboss/help/frestdist frestdist Calculate distance matrix from restriction sites or fragments. Detailed info about this operation can be found at the following link: http://liv.bmc.uu.se/cgi-bin/emboss/help/frestdist data_direct_data Type: string. File containing one or more sets of restriction data. This is a mandatory parameter if the 'data_url' parameter is not chosen. 'data_direct_data' and 'data_url' parameters are mutually exclusive. An example input can be found here: http://liv.bmc.uu.se/cgi-bin/emboss/help/frestdist#input.1 String data_url Type: string. URL of File containing one or more sets of restriction data. This is a mandatory parameter if the 'data_direct_data' parameter is not chosen. 'data_direct_data' and 'data_url' parameters are mutually exclusive. String restsites Type: boolean (true/false). Restriction sites (put 'false' if you want restriction fragments). This is an optional parameter. The default is 'true' true String neili Type: boolean (true/false). Use original Nei/Li model (default uses modified Nei/Li model). This is an optional parameter. The default is 'false' false String gamma Type: boolean(true/false). Gama distributed rates among sites. This is an optional parameter. The default is 'false' false String gammacoefficient Type: float. Coefficient of variation of substitution rate among sites. This is an optional parameter. The default is 1.0 1.0 String ttratio Type: float. Transition/transversion ratio. This is an optional parameter. The default is 2.0 2.0 String sitelength Type: long. Site length. Allowed value: Integer 1 or more. This is an optional parameter. The default is 6. 6 String lower Type: boolean(true/false). Lower triangular distance matrix. This is an optional parameter. The default is 'false'. false String printdata Type: boolean (true/false). Print data at start of run. This is an optional parameter. The default is'false'. false String progress Type: boolean(true/false). Print indications of progress of run. This is an optional parameter. The default is'true' true String report Type: string. A general report for the underlying analysis job. String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. String outfile Returns distances between species from restriction sites or fragments. frestdist output contains on its first line the number of species. The distance matrix is then printed in standard form, with each species starting on a new line with the species name, followed by the distances to the species in order. In general the format of the distance matrix is such that it can serve as input to any of the distance matrix programs. String http://www.mygrid.org.uk/ontology#calculating Soaplab service