fdnainvar European Bioinformatics Institute http://www.ebi.ac.uk/ EBI http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.fdnainvar http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.fdnainvar?wsdl Nucleic acid sequence Invariants method. This program reads in nucleotide sequences for four species and computes the phylogenetic invariants discovered by James Cavender (Cavender and Felsenstein, 1987) and James Lake (1987). Detailed info about this operation can be found at the following link: http://genome.jouy.inra.fr/doc/genome/suite-logicielle/emboss/html/embassy/phylipnew/fdnainvar.html fdnainvar Nucleic acid sequence Invariants method. This program reads in nucleotide sequences for four species and computes the phylogenetic invariants discovered by James Cavender (Cavender and Felsenstein, 1987) and James Lake (1987). Detailed info about this operation can be found at the following link: http://genome.jouy.inra.fr/doc/genome/suite-logicielle/emboss/html/embassy/phylipnew/fdnainvar.html sequence_usa Type: string. File containing one or more sequence aligment. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example:database:accession -->embl:X65923 or swissprot:Q7M4G0 | database:entry_name -->swissprot:AMIC_PSEAE |database:ID_name -->embl:paamir.Choose either this parameter or the sequence_direct_data parameter but not both together. Parameter mandatory if the sequence_direct_data parameter has not been chosen. String sequence_direct_data Type: string. File containing one or more sequence. Choose this parameter if you want to provide the'sequence'value as string. Parameter mandatory if the sequence_usa parameter hasn't been chosen.An example input can be found here: http://genome.jouy.inra.fr/doc/genome/suite-logicielle/emboss/html/embassy/phylipnew/fdnainvar.html#input.1 http://www.mygrid.org.uk/ontology#nucleotide_sequence String sformat Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. String sbegin Type: long. The last position to be used in the sequence. This is an optional parameter. By default it is the end of the sequence. String send Type: long. The last position to be used in the sequence. This is an optional parameter. By default it is the end of the sequence. String sprotein Type: boolean. Is the sequence a protein? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String snucleotide Type: boolean. Is the sequence a nucleotide? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String sreverse Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. False by default. String slower Type: boolean. Convert the sequence to lower case. This is an optional parameter. False by default. String supper Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. False by default. String weights_direct_data Type: string. Phylip weights file. This is an optional parameter. No default value available.'weights_direct_data'and'weights_url'are mutually exclusive. String weights_url Type: string. URL of Phylip weights file.This is an optional parameter. No default value available.'weights_direct_data'and'weights_url'are mutually exclusive. String printdata Type: boolean(True/False). Print data at start of run. This is an optional parameter. The default is'false' false String dotdiff Type: boolean (true/false). Use dot-differencing to display results. This is an optional parameter. The default is'true'. true String printpattern Type: boolean(true/false). Print counts of patterns. This is an optional parameter. The default is'true'. true String printinvariant Type: boolean(true/false). Print invariants. This is an optional parameter. The default is'true' true String progress Type: boolean(true/false). Print indications of progress of run. This is an optional parameter. The default is'true'. true String report Type: string. A general report for the underlying analysis job. String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. String outfile Returns the phylogenetic invariants of given nucleotide sequence. http://www.mygrid.org.uk/ontology#phylogenetic_tree String http://www.mygrid.org.uk/ontology#predicting http://www.mygrid.org.uk/ontology#phylogenetic_algorithm Soaplab service