fdnacomp European Bioinformatics Institute http://www.ebi.ac.uk/ EBI http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.fdnacomp http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.fdnacomp?wsdl Estimates phylogenies from nucleic acid sequence data using the compatibility criterion, which searches for the largest number of sites which could have all states (nucleotides) uniquely evolved on the same tree. Detailed info about this operation can be found at the following link: http://genome.jouy.inra.fr/doc/genome/suite-logicielle/emboss/html/embassy/phylipnew/fdnacomp.html fdnacomp Estimates phylogenies from nucleic acid sequence data using the compatibility criterion, which searches for the largest number of sites which could have all states (nucleotides) uniquely evolved on the same tree. Detailed info about this operation can be found at the following link: http://genome.jouy.inra.fr/doc/genome/suite-logicielle/emboss/html/embassy/phylipnew/fdnacomp.html sequence_usa Type: string. File containing one or more sequence. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequenceis to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example:database:accession -->embl:X65923 or swissprot:Q7M4G0 | database:entry_name -->swissprot:AMIC_PSEAE |database:ID_name -->embl:paamir.Choose either this parameter or the sequence_direct_data parameter but not both together. Parameter mandatory if the sequence_direct_data parameter has not been chosen. String sequence_direct_data Type: string. File containing one or more sequence. Choose this parameter if you want to provide the'sequence'value as string. Parameter mandatory if the sequence_usa parameter hasn't been chosen.An example of input is available here:http://genome.jouy.inra.fr/doc/genome/suite-logicielle/emboss/html/embassy/phylipnew/fdnacomp.html#input.1 http://www.mygrid.org.uk/ontology#DNA_sequence String sformat Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. String sbegin Type: long. The first position to be used in the sequence, for example: sbegin=1 (default value) means start with the first base in the sequence. This is an optional parameter. String send Type: long. The last position to be used in the sequence. This is an optional parameter. By default it is the end of the sequence. String sprotein TType: boolean. Is the sequence a protein? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String snucleotide Type: boolean. Is the sequence a nucleotide? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String sreverse Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. False by default. String slower Type: boolean. Convert the sequence to lower case. This is an optional parameter. False by default. String supper Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. False by default. String intreefile_direct_data Type: string. Phylip tree file. This is an optional parameter. No default value available.'intreefile_direct_data'and'intreefile_url'are mutually exclusive. String intreefile_url Type: string. URL of Phylip tree file. This is an optional parameter. No default value available.'intreefile_direct_data'and'intreefile_url'are mutually exclusive. String weights_direct_data Type: string. Phylip weights file. This is an optional parameter. No default value available.'weights_direct_data'and'weights_url'are mutually exclusive. String weights_url Type: string. URL of Phylip weights file.This is an optional parameter. No default value available.'weights_direct_data'and'weights_url'are mutually exclusive. String outgrno Type: long. Species number to use as outgroup. This is an optional parameter. The default is 0. 0 String njumble Type: long. Number of times to randomise. This is an optional parameter. The default is 0. 0 String seed ype: long. Random number seed between 1 and 32767 (must be odd). This is an optional parameter. The default is 1. 1 String trout Type: boolean (Yes/No). Write out trees to tree file. This is an optional parameter. The default is'Yes'. Y String printdata Type: boolean (Yes/No). Print data at start of run. This is an optional parameter. The default is'No'. false String progress Type: boolean (Yes/No). Print indications of progress of run. This is an optional parameter. The default is'Yes'. true String treeprint Type: boolean (Yes/No). Print out tree. This is an optional parameter. The default is'Yes'. true String stepbox Type: boolean (true/false). Print steps&compatibility at sites. This is an optional parameter. The default is'false'. false String ancseq Type: boolean(true/false). Print sequences at all nodes of tree. This is an optional parameter. The default is'false' false String report Type: string. A general report for the underlying analysis job. No simpleParameter String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. No simpleParameter String outfile Returns phylogenetic tree from nucleic acid sequence data. http://www.mygrid.org.uk/ontology#phylogenetic_tree String outtreefile Returns phylogenetic tree file. String http://www.mygrid.org.uk/ontology#predicting http://www.mygrid.org.uk/ontology#EMBL_nucleotide_sequence_database http://www.mygrid.org.uk/ontology#phylogenetic_algorithm Soaplab service