<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/TAVERNA/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>fdiscboot</serviceName>
		<organisation >
			<organisationName>European Bioinformatics Institute</organisationName>
			<organisationDescriptionText>http://www.ebi.ac.uk/</organisationDescriptionText>
			<organisationKey>EBI</organisationKey>
		</organisation>

		<locationURL>http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.fdiscboot</locationURL>
		<interfaceWSDL>http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.fdiscboot?wsdl</interfaceWSDL>
		<serviceDescriptionText>Reads in a data set, and produces multiple data sets from it by bootstrap resampling. Detailed info about this operation can be found at the following link: http://genome.jouy.inra.fr/doc/genome/suite-logicielle/emboss/html/embassy/phylipnew/fdiscboot.html</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>fdiscboot</operationName>
				<operationDescriptionText>Reads in a data set, and produces multiple data sets from it by bootstrap resampling. Detailed info about this operation can be found at the following link: http://genome.jouy.inra.fr/doc/genome/suite-logicielle/emboss/html/embassy/phylipnew/fdiscboot.html</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>infile_direct_data</parameterName>
						<parameterDescription>Type: string. File containing one or more sets of data. This is a mandatory parameter.&apos;infile_direct_data&apos;and&apos;infile_url&apos;are mutually exclusive. An example of data set can be found here: http://genome.jouy.inra.fr/doc/genome/suite-logicielle/emboss/html/embassy/phylipnew/fdiscboot.html#input.1</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>infile_url</parameterName>
						<parameterDescription>Type: string. URL of file containing one or more sets of data. This is a mandatory parameter if&apos;infile_direct_data&apos;parameter is not selected.&apos;infile_direct_data&apos;and&apos;infile_url&apos;are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>mixfile_direct_data</parameterName>
						<parameterDescription>Type: string. mix output file. This is an optional parameter. No default value available.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>mixfile_url</parameterName>
						<parameterDescription>Type: string. URL of Phylip mix output file. This is an optional parameter. No default value available.&apos;mixfile_direct_data&apos;and&apos;mixfile_url&apos;are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>ancfile_direct_data</parameterName>
						<parameterDescription>Type: string. Ancestral states file. This is an optional parameter. No default value available.&apos;ancfile_direct_data&apos;and&apos;ancfile_url&apos;are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>ancfile_url</parameterName>
						<parameterDescription>Type: string. URL of ancestral states file. This is an optional parameter. No default value available.&apos;ancfile_direct_data&apos;and&apos;ancfile_url&apos;are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>weights_direct_data</parameterName>
						<parameterDescription>Type: string. Phylip weights file. This is an optional parameter. No default value available.&apos;weights_direct_data&apos;and&apos;weights_url&apos;are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>weights_url</parameterName>
						<parameterDescription>Type: string. URL of Phylip weights file.This is an optional parameter. No default value available.&apos;weights_direct_data&apos;and&apos;weights_url&apos;are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>factorfile_direct_data</parameterName>
						<parameterDescription>Type: string. Factors file. This is an optional parameter. No default value available.&apos;factorfile_direct_data&apos;and&apos;factorfile_url&apos;are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>factorfile_url</parameterName>
						<parameterDescription>Type: string. URL of factors file. This is an optional parameter. No default value available.&apos;factorfile_direct_data&apos;and&apos;factorfile_url&apos;are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>test</parameterName>
						<parameterDescription>Type: string. Choose test to use. This is an optional parameter. The allowed values for this parameter are: b(Bootstrap)|j(Jackknife)| c(Permute species for each character)|o(Permute character order)| s(Permute within species)|r(Rewrite data).The default is&apos;b&apos;</parameterDescription>
						<defaultValue>b</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>regular</parameterName>
						<parameterDescription>Type: boolean(Yes/No). Altered sampling fraction. This is an optional parameter. The default is&apos;No&apos;</parameterDescription>
						<defaultValue>N</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>fracsample</parameterName>
						<parameterDescription>Type: float. Samples as percentage of sites. This is an optional parameter. Allowed values are numbers from 0.100 to 100.000. The default is 100.0</parameterDescription>
						<defaultValue>100.0</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>morphseqtype</parameterName>
						<parameterDescription>Type: string. Output format. This is an optional parameter. The allowed values for this parameter are: p(PHYLIP)| n(NEXUS).The default is&apos;p&apos;.</parameterDescription>
						<defaultValue>p</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>blocksize</parameterName>
						<parameterDescription>Type: long. Block size for bootstraping. This is an optional parameter. Allowed values: Integer 1 or more.The default is 1.</parameterDescription>
						<defaultValue>1</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>reps</parameterName>
						<parameterDescription>Type: long. How many replicates. This is an optional parameter. Allowed values: Integer 1 or more. The default is 100</parameterDescription>
						<defaultValue>100</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>justweights</parameterName>
						<parameterDescription>Type: string. Write out datasets or just weights. This is an optional parameter. The allowed values for this parameter are: d(Datasets)| w(Weights).The default is&apos;d&apos;.</parameterDescription>
						<defaultValue>d</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>seed</parameterName>
						<parameterDescription>Type: long. Random number seed between 1 and 32767 (must be odd). This is an optional parameter. The default is 1.</parameterDescription>
						<defaultValue>1</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>printdata</parameterName>
						<parameterDescription>Type: boolean (Yes/No). Print data at start of run. This is an optional parameter. The default is&apos;No&apos;.</parameterDescription>
						<defaultValue>false</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>dotdiff</parameterName>
						<parameterDescription>Type: boolean(true/false). Use dot-differencing. This is an optional parameter. The default is&apos;true&apos;.</parameterDescription>
						<defaultValue>true</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>progress</parameterName>
						<parameterDescription>Type: boolean (Yes/No). Print indications of progress of run. This is an optional parameter. The default is&apos;Yes&apos;.</parameterDescription>
						<defaultValue>true</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>report</parameterName>
						<parameterDescription>Type: string. A general report for the underlying analysis job.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>detailed_status</parameterName>
						<parameterDescription>Type: long. The exit code of the underlying analysis job, 0 means the job returned normally.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outfile</parameterName>
						<parameterDescription>Reurns multiple data sets from a data set by bootstrap resampling.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outancfile</parameterName>
						<parameterDescription>Returns ancestor data output file if the parameter &apos;ancfile_direct_data&apos; is selected.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outmixfile</parameterName>
						<parameterDescription>Returns Phylip mix data output file if the parameter&apos;mixfile_direct_data&apos;is selected</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outfactfile</parameterName>
						<parameterDescription>Returns Phylip factor data if the parameter&apos;factorfile_direct_data&apos;is selected.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#calculating</operationTask>
			</serviceOperation>

		</operations>

		<serviceType>Soaplab service</serviceType>
	</serviceDescription>

</serviceDescriptions>
