<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/TAVERNA/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>fgendist</serviceName>
		<organisation >
			<organisationName>European Bioinformatics Institute</organisationName>
			<organisationDescriptionText>http://www.ebi.ac.uk/</organisationDescriptionText>
			<organisationKey>EBI</organisationKey>
		</organisation>

		<locationURL>http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_gene_frequencies.fgendist</locationURL>
		<interfaceWSDL>http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_gene_frequencies.fgendist?wsdl</interfaceWSDL>
		<serviceDescriptionText>Compute genetic distances from gene frequencies. Detailed info about this operation can be found at the following link: http://genome.jouy.inra.fr/doc/genome/suite-logicielle/emboss/html/embassy/phylipnew/fgendist.html</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>fgendist</operationName>
				<operationDescriptionText>Compute genetic distances from gene frequencies. Detailed info about this operation can be found at the following link: http://genome.jouy.inra.fr/doc/genome/suite-logicielle/emboss/html/embassy/phylipnew/fgendist.html</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>infile_direct_data</parameterName>
						<parameterDescription>Type: string. File containing one or more sets of data. This is a mandatory parameter.&apos;infile_direct_data&apos;and&apos;infile_url&apos;are mutually exclusive. An example of data set can be found here: http://genome.jouy.inra.fr/doc/genome/suite-logicielle/emboss/html/embassy/phylipnew/fgendist.html#input.1</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>infile_url</parameterName>
						<parameterDescription>Type: string. URL of file containing one or more sets of data. This is a mandatory parameter if&apos;infile_direct_data&apos;parameter is not selected.&apos;infile_direct_data&apos;and&apos;infile_url&apos;are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>method</parameterName>
						<parameterDescription>Type: string. Distance methods to use. This is an optional parameter. The allowed values for this parameter are: n(Nei genetic distance) |c(Cavalli-Sforza chord measure) |r(Reynolds genetic distance).The default is&apos;n&apos;.</parameterDescription>
						<defaultValue>n</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>progress</parameterName>
						<parameterDescription>Type: boolean (Yes/No). Print indications of progress of run. This is an optional parameter. The default is&apos;Yes&apos;.</parameterDescription>
						<defaultValue>true</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>lower</parameterName>
						<parameterDescription>Type: boolean (Yes/No). Lower triangular distance matrix. This is an optional parameter. The default is&apos;No.</parameterDescription>
						<defaultValue>false</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>report</parameterName>
						<parameterDescription>Type: string. A general report for the underlying analysis job.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>detailed_status</parameterName>
						<parameterDescription>Type: long. The exit code of the underlying analysis job, 0 means the job returned normally.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outfile</parameterName>
						<parameterDescription>Returns genetic distances from gene frequencies.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#calculating</operationTask>
			</serviceOperation>

		</operations>

		<serviceType>Soaplab service</serviceType>
	</serviceDescription>

</serviceDescriptions>
