fdolpenny European Bioinformatics Institute http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_discrete_characters.fdolpenny http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_discrete_characters.fdolpenny?wsdl Finds all most parsimonious phylogenies for discrete-character data with two states, for the Dollo or polymorphism parsimony criteria using the branch-and-bound method of exact search. Detailed info about this operation can be found at the following link: http://pro.genomics.purdue.edu/cgi-bin/emboss/help/fdolpenny fdolpenny Finds all most parsimonious phylogenies for discrete-character data with two states, for the Dollo or polymorphism parsimony criteria using the branch-and-bound method of exact search. Detailed info about this operation can be found at the following link: http://pro.genomics.purdue.edu/cgi-bin/emboss/help/fdolpenny infile_direct_data Type: string. File containing one or more sets of data. This is a mandatory parameter.'infile_direct_data'and'infile_url'are mutually exclusive. An example of data set can be found here:http://pro.genomics.purdue.edu/cgi-bin/emboss/help/fdolpenny#input.1 String infile_url Type: string. URL of file containing one or more sets of data. This is a mandatory parameter if'infile_direct_data'parameter is not selected.'infile_direct_data'and'infile_url'are mutually exclusive. String weights_direct_data Type: string. Phylip weights file. This is an optional parameter. No default value available.'weights_direct_data'and'weights_url'are mutually exclusive. String weights_url Type: string. URL of Phylip weights file. This is an optional parameter. No default value available.'weights_direct_data'and'weights_url'are mutually exclusive. String ancfile_direct_data Type: string. Phylip ancestral states file. This is an optional parameter. No default value available.'ancfile_direct_data'and'ancfile_url'are mutually exclusive. String ancfile_url Type: string. URL of Phylip ancestral states file. This is an optional parameter. No default value available.'ancfile_direct_data'and'ancfile_url'are mutually exclusive. String thresh Type: boolean(Yes/No). Use threshold parsimony. This is an optional parameter. The default is'No'. N String threshold Type: float. Threshold value(0.00 or more). This is an optional parameter. The default is 1.0 1.0 String howmany Type: long. How many groups of trees. This is an optional parameter. The default is 1000. 1000 String howoften Type: long. How often to report, in trees. This is an optional parameter. The default is 100. 100 String simple Type: boolean (Yes/No). Branch and bound is simple. This is an optional parameter. The default is'Yes' true String method Type: string. Parsimony method used. This is an optional parameter. The allowed values for this parameter are: d(Dollo)| p(Polymorphism). The default is'd'. d String trout Type: boolean (Yes/No). Write out trees to tree file. This is an optional parameter. The default is'Yes'. Y String printdata Type: boolean (Yes/No). Print data at start of run. Thisis an optional parameter. The default is'No'. false String progress Type: boolean (Yes/No). Print indications of progress of run. This is an optional parameter. The default is'Yes'. true String treeprint Type: boolean (Yes/No). Print out tree. This is an optional parameter. The default is'Yes'. true String ancseq Type: boolean(Yes/No). Print states at all nodes of tree. This is an optional parameter. The default is'No'. false String stepbox Type: boolean(Yes/No). Print out steps in each character. This is an optional parameter. The default is'No'. false String report Type: string. A general report for the underlying analysis job. String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. String outfile Returns parsimonious phylogenies for discrete-character data. http://www.mygrid.org.uk/ontology#phylogenetic_tree String outtreefile Returns phylogenetic tree files String http://www.mygrid.org.uk/ontology#predicting Soaplab service