fdollop European Bioinformatics Institute http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_discrete_characters.fdollop http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_discrete_characters.fdollop?wsdl Estimates phylogenies by the Dollo or polymorphism parsimony criteria for discrete character data with two states (0 and 1). Also reconstructs ancestral states and allows weighting of characters. Detailed info about this operation can be found at the following link: http://pro.genomics.purdue.edu/cgi-bin/emboss/help/fdollop fdollop Estimates phylogenies by the Dollo or polymorphism parsimony criteria for discrete character data with two states (0 and 1). Also reconstructs ancestral states and allows weighting of characters. Detailed info about this operation can be found at the following link: http://pro.genomics.purdue.edu/cgi-bin/emboss/help/fdollop infile_direct_data Type: string. File containing one or more sets of data. This is a mandatory parameter.'infile_direct_data'and'infile_url'are mutually exclusive. An example of data set can be found here: http://pro.genomics.purdue.edu/cgi-bin/emboss/help/fdollop#input.1 String infile_url Type: string. URL of file containing one or more sets of data. This is a mandatory parameter if'infile_direct_data'parameter is not selected.'infile_direct_data'and'infile_url'are mutually exclusive. String intreefile_direct_data Type: string. Phylip tree file. This is an optional parameter. No default value available.'intreefile_direct_data'and'intreefile_url'are mutually exclusive. String intreefile_url Type: string. URL of Phylip tree file. This is an optional parameter. No default value available.'intreefile_direct_data'and'intreefile_url'are mutually exclusive. String weights_direct_data Type: string. Phylip weights file. This is an optional parameter. No default value available.'weights_direct_data'and'weights_url'are mutually exclusive. String weights_url Type: string. URL of Phylip weights file. This is an optional parameter. No default value available.'weights_direct_data'and'weights_url'are mutually exclusive. String ancfile_direct_data Type: string. Phylip ancestral states file. This is an optional parameter. No default value available.'ancfile_direct_data'and'ancfile_url'are mutually exclusive. String ancfile_url Type: string. URL of Phylip ancestral states file. This is an optional parameter. No default value available.'ancfile_direct_data'and'ancfile_url'are mutually exclusive. String method Type: string. Parsimony method used. This is an optional parameter. The allowed values for this parameter are:d(Dollo)| p(Polymorphism).The default is'd'. d String njumble Type: long. Number of times to randomise. This is an optional parameter. The default is 0. 0 String seed Type: long. Random number seed between 1 and 32767 (must be odd). This is an optional parameter. The default is 1. 1 String threshold Type: float. Threshold value (0.000 or more). This is an optional parameter. String trout Type: boolean (Yes/No). Write out trees to tree file. This is an optional parameter. The default is'Yes'. Y String printdata Type: boolean (Yes/No). Print data at start of run. This is an optional parameter. The default is'No'. false String progress Type: boolean (Yes/No). Print indications of progress of run. This is an optional parameter. The default is'Yes'. true String treeprint Type: boolean (Yes/No). Print out tree. This is an optional parameter. The default is'Yes'. true String ancseq Type: boolean(Yes/No). Print states at all nodes of tree. This is an optional parameter. The default is'No'. false String stepbox Type: boolean(Yes/No). Print out steps in each character. This is an optional parameter. The default is'No'. false String report Type: string. A general report for the underlying analysis job. String detailed_status Type: long.The exit code of the underlying analysis job, 0 means the job returned normally. String outfile Returns phylogenies by the Dollo or polymorphism parsimony algorithm. http://www.mygrid.org.uk/ontology#phylogenetic_tree String outtreefile Returns phylogenetic tree file. String http://www.mygrid.org.uk/ontology#predicting Soaplab service