<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/TAVERNA/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>fcontrast</serviceName>
		<organisation >
			<organisationName>European Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_continuous_characters.fcontrast</locationURL>
		<interfaceWSDL>http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_continuous_characters.fcontrast?wsdl</interfaceWSDL>
		<serviceDescriptionText>Continuous character Contrasts. Reads a tree from a tree file, and a data set with continuous characters data, and produces the independent contrasts for those characters, for use in any multivariate statistics package. Detailed info about this operation can be found at the following link: http://bioinfo.nhri.org.tw/cgi-bin/emboss/help/fcontrast</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>fcontrast</operationName>
				<operationDescriptionText>Continuous character Contrasts. Reads a tree from a tree file, and a data set with continuous characters data, and produces the independent contrasts for those characters, for use in any multivariate statistics package. Detailed info about this operation can be found at the following link: http://bioinfo.nhri.org.tw/cgi-bin/emboss/help/fcontrast</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>infile_direct_data</parameterName>
						<parameterDescription>Type: string. File containing one or more sets of data. This is a mandatory parameter.&apos;infile_direct_data&apos;and&apos;infile_url&apos;are mutually exclusive. An example of data set can be found here: http://bioinfo.nhri.org.tw/cgi-bin/emboss/help/fcontrast#input.1</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>infile_url</parameterName>
						<parameterDescription>Type: string. Url of file containing one or more sets of data. This is a mandatory parameter if&apos;infile_direct_data&apos;parameter is not selected.&apos;infile_direct_data&apos;and&apos;infile_url&apos;are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>intreefile_direct_data</parameterName>
						<parameterDescription>Type: string. Phylip tree file. This is a mandatory parameter.&apos;intreefile_direct_data&apos;and&apos;intreefile_url&apos;are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>intreefile_url</parameterName>
						<parameterDescription>Type: string. Url of Phylip tree file. This is a mandatory parameter if&apos;intreefile_direct_data&apos;is not chosen.&apos;intreefile_direct_data&apos;and&apos;intreefile_url&apos;are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>varywithin</parameterName>
						<parameterDescription>Type: boolean (true/false). Within-population variation in data. This is an optional parameter. The default is&apos;false&apos;.</parameterDescription>
						<defaultValue>false</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>reg</parameterName>
						<parameterDescription>Type: boolean (true/false). Print out correlations and regressions. This is an optional parameter. The default is&apos;true&apos;.</parameterDescription>
						<defaultValue>true</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>writecont</parameterName>
						<parameterDescription>Type: boolean (true/false). Print out contrasts. This is an optional parameter. The default is&apos;false&apos;.</parameterDescription>
						<defaultValue>false</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>nophylo</parameterName>
						<parameterDescription>Type: boolean (true/false). LRT (likelihood ratio test) test of no phylogenetic component, with and without VarA. This is an optional parameter. The default is&apos;true&apos;.</parameterDescription>
						<defaultValue>true</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>printdata</parameterName>
						<parameterDescription>Type: boolean (true/false). Print data at start of run. This is an optional parameter. The default is&apos;false&apos;.</parameterDescription>
						<defaultValue>false</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>progress</parameterName>
						<parameterDescription>Type: boolean (true/false). Print indications of progress of run. This is an optional parameter. The default is&apos;true&apos;.</parameterDescription>
						<defaultValue>true</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>report</parameterName>
						<parameterDescription>Type: string. A general report for the underlying analysis job.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>detailed_status</parameterName>
						<parameterDescription>Type: long. The exit code of the underlying analysis job, 0 means the job returned normally.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outfile</parameterName>
						<parameterDescription>Returns the covariances between all pairs of characters, the regressions of each character on each other, and the correlations between all pairs of characters.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#calculating</operationTask>
			</serviceOperation>

		</operations>

		<serviceType>Soaplab service</serviceType>
	</serviceDescription>

</serviceDescriptions>
