tfscan European Bioinformatics Institute http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_transcription.tfscan http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_transcription.tfscan?wsdl Scans DNA sequences for transcription factors. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.1/emboss/apps/tfscan.html tfscan Scans DNA sequences for transcription factors. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.1/emboss/apps/tfscan.html sequence_usa Type: string. DNA sequence. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example, database:accession -->embl:X65923 or swissprot:Q7M4G0 | database:entry_name -->swissprot:AMIC_PSEAE |database:ID_name -->embl:paamir. Choose either this parameter or the asequence_direct_data parameter but not both together. Parameter mandatory if the asequence_direct_data parameter has not been chosen. String sequence_direct_data Type: string. DNA sequence. Choose this parameter if you want to provide the'sequence'value as string (DNA sequence). Parameter mandatory if the asequence_usa parameter hasn't been chosen. http://www.mygrid.org.uk/ontology#DNA_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String sformat Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. By default the service autodetects the sequence format. String sbegin Type: long. The first position to be used in the sequence, for example: sbegin=1 (default value) means start with the first base in the sequence. This is an optional parameter. String send Type: long. The last position to be used in the sequence. This is an optional parameter. By default it is the end of the sequence. String sprotein Type: boolean. Is the sequence a protein? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String snucleotide Type: boolean. Is the sequence a nucleotide? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. String sreverse Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. False by default. String slower Type: boolean. Convert the sequence to lower case. This is an optional parameter. False by default. String supper Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. False by default. String menu Type: string. Transcription Factor Class. This is an optional parameter. The allowed values for this parameter are:F(fungi)| I(insect)| P(plant)| V(vertebrate)| O(other)| C(Custom).The default is'V'. V String mismatch Type: long. Number of mismatches. This is an optional parameter. The default is 0. 0 String custom_direct_data Type: string. Transfac database data file. This is an optional parameter.'custom_direct_data'and'custom_url'are mutually exclusive. String custom_url Type: string. URL of Transfac database data file. This is an optional parameter.'custom_direct_data'and'custom_url'are mutually exclusive. String minlength Type: long. Display matches equal to or above this length. This is an optional parameter. The default is 1. 1 String report Type: string. A general report for the underlying analysis job. String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. String outfile Returns possible transcription factor. The output consists of a title line then 5 columns separated by whitespace. The first column is the identifier of the entry. The second column is the Accession Number of the entry. The third and fourth columns are the start and end positions of the match in your input sequence. The fifth column is the sequence of the region where a match has been found. Binding factor information, where available, is given at the end of the matches for each matching entry. String http://www.mygrid.org.uk/ontology#predicting Soaplab service