<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/TAVERNA/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>vrnaplot</serviceName>
		<organisation >
			<organisationName>European Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_rna_folding.vrnaplot</locationURL>
		<interfaceWSDL>http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_rna_folding.vrnaplot?wsdl</interfaceWSDL>
		<serviceDescriptionText>Plot vrnafold output. Detailed info about this operation can be found at the following link: http://pro.genomics.purdue.edu/cgi-bin/emboss/help/vrnaplot</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>vrnaplot</operationName>
				<operationDescriptionText>Plot vrnafold output. Detailed info about this operation can be found at the following link: http://pro.genomics.purdue.edu/cgi-bin/emboss/help/vrnaplot</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>structure_direct_data</parameterName>
						<parameterDescription>Type: string. Vienna RNAfold output file. This is a mandatory parameter.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>structure_url</parameterName>
						<parameterDescription>Type: string.URL of Vienna RNAfold output file. This is a mandatory parameter if&apos;structure_direct_data&apos;parameter is not selected. Both parameters are mutually exclusive.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>layout</parameterName>
						<parameterDescription>Type: string. Layout. This is an optional parameter. The allowed values for this parameter are: radial, naview. The default is&apos;naview&apos;.</parameterDescription>
						<defaultValue>naview</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>optype</parameterName>
						<parameterDescription>Type: string. Output type. This is an optional parameter. The allowed values for this parameter are: ps(postscript)| gml(graph meta language)| svg(scaleable vector graphics)| xrna(XRNA save file).The default is&apos;ps&apos;.</parameterDescription>
						<defaultValue>ps</defaultValue>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>pre</parameterName>
						<parameterDescription>Type: string. Pre-annotation. This is an optional parameter.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>post</parameterName>
						<parameterDescription>Type: string. Post-annotation. This is an optional parameter.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>report</parameterName>
						<parameterDescription>Type: string. A general report for the underlying analysis job.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>detailed_status</parameterName>
						<parameterDescription>Type: long. The exit code of the underlying analysis job, 0 means the job returned normally.</parameterDescription>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outfile</parameterName>
						<parameterDescription>Returns RNA structure plot.</parameterDescription>
						<semanticType>http://www.mygrid.org.uk/ontology#RNA_structure</semanticType>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#displaying</operationTask>
			</serviceOperation>

		</operations>

		<serviceType>Soaplab service</serviceType>
	</serviceDescription>

</serviceDescriptions>
