einverted European Bioinformatics Institute http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_repeats.einverted http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_repeats.einverted?wsdl Finds DNA inverted repeats. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/einverted.html einverted Finds DNA inverted repeats. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/einverted.html sequence_usa Type: string. DNA sequence. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example, database:accession -->embl:X65923 or swissprot:Q7M4G0 | database:entry_name -->swissprot:AMIC_PSEAE |database:ID_name -->embl:paamir. Choose either this parameter or the sequence_direct_data parameter but not both together. Parameter mandatory if the sequence_direct_data parameter has not been chosen. false http://www.mygrid.org.uk/ontology#EMBL_accession String sequence_direct_data Type: string. DNA sequence. Choose this parameter if you want to provide the 'sequence' value as string (DNA sequence). Parameter mandatory if the sequence_usa parameter hasn't been chosen. false http://www.mygrid.org.uk/ontology#DNA_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String sformat Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. By default the service autodetects the sequence format. false String sbegin Type: long. The first position to be used in the sequence, for example: sbegin=1 (default value) means start with the first base in the sequence. This is an optional parameter. false String send Type: long. The last position to be used in the sequence. This is an optional parameter. By default it is the end the sequence. false String sprotein Type: boolean. Is the sequence a protein? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. false String snucleotide Type: boolean. Is the sequence a nucleotide? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. false String sreverse Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. False by default. false String slower Type: boolean. Convert the sequence to lower case. This is an optional parameter. False by default. false String supper Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. False by default. false String gap Type: long. This specifies the size of the gap that is used to separate the individual dot plots in the display. The size is measured in residues, as displayed in the output. This is an optional parameter. The default is 12. 12 false String threshold Type: long. Minimum score threshold. This is an optional parameter. The default is 50 50 false String match Type: long. Match score. This is an optional parameter. The default is 3. 3 false String mismatch Type: long. This specifies the percent mismatch to be used in calculations (it is ignored unless -product is used). This is an optional parameter. The default is -4 -4 false String maxrepeat Type: long. Maximum separation between the start of repeat and the end of the inverted repeat. This is an optional parameter. The default is 2000 bases 2000 false String osformat Type: string. Output format. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. The default is 'fasta' fasta false String report Type: string. A general report for the underlying analysis job. String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. String outfile Returns alignment between DNA inverted repeats and its reverse sequence. http://www.mygrid.org.uk/ontology#pairwise_sequence_alignment_report String outseq Returns DNA inverted repeats found in specified sequence. false http://www.mygrid.org.uk/ontology#DNA_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String http://www.mygrid.org.uk/ontology#retrieving http://www.mygrid.org.uk/ontology#EMBL_nucleotide_sequence_database Soaplab service